datasets
Training and evaluation data, with the modality, task and licence stated up front. Listed live from the Hugging Face Hub.
biomedica_microscopy_imagining_subset_parquet
Dataset Card for "biomedica_microscopy_imagining_subset_parquet"
More Information needed
malaria-microscopy-vqa
Malaria Microscopy Visual Question Answering (VQA) Dataset
Dataset Description
This dataset contains multi-choice visual question answering pairs for malaria microscopy images, focusing on parasite detection, classification, species identification, and severity assessment.
Dataset Summary
The Malaria Microscopy VQA Dataset is designed for training and evaluating AI systems on medical microscopy image analysis tasks. It contains 67 questions across 59 unique… See the full description on the dataset page: https://huggingface.co/datasets/EricPeter/malaria-microscopy-vqa.Electron_microscopy_datasetThe dataset:
Is a patch from the existing dataset available at https://www.epfl.ch/labs/cvlab/data/data-em/.
Contains patches of size (256, 256).
Removes any patches with empty masks to ensure quality.
Has the same license applied as the original dataset.
Please refer to the license for information on allowed usage.
If you have any questions or concerns about the dataset, please do not hesitate to contact me.
brightfield-microscopy-scc
Brightfield Microscopy SCC Dataset
Dataset Description
The Brightfield Microscopy SCC Dataset contains brightfield microscopy images that have been sliced from 4K resolution images. The cells in the images are labeled with bounding boxes. This dataset is used for training unconditional diffusion models and cell detection models.
Dataset Structure
The dataset is organized into the following splits:
train: 27,161 examples
validation: 3,302 examples
test: 1,580… See the full description on the dataset page: https://huggingface.co/datasets/mario-dg/brightfield-microscopy-scc.clip_microscopy_image_text_embeddingsbrightfield-microscopy-scc-filtered
Brightfield Microscopy SCC Dataset
Filtered to only contain images with no well edge visible
Dataset Description
The Brightfield Microscopy SCC Dataset contains brightfield microscopy images that have been sliced from 4K resolution images. The cells in the images are labeled with bounding boxes. This dataset is used for training unconditional diffusion models and cell detection models.
Dataset Structure
The dataset is organized into the following splits:… See the full description on the dataset page: https://huggingface.co/datasets/mario-dg/brightfield-microscopy-scc-filtered.microscopygpt_jarvisdft_2dafrica-who-number-of-malaria-suspects-examined-by-microscopy
Africa — WHO GHO: Number of malaria suspects examined by microscopy | Africa (World Health Organization)
Size category: n<1K - Formats: parquet - Sector: health - Engineered by Electric Sheep Africa
TL;DR
This dataset is part of the Electric Sheep Africa catalog on Hugging Face. It is indexed for African data discovery with standardized metadata, loading guidance, provenance notes, and analyst-oriented context.
What This Dataset Covers
Health… See the full description on the dataset page: https://huggingface.co/datasets/electricsheepafrica/africa-who-number-of-malaria-suspects-examined-by-microscopy.microscopygpt_jarvisdft_2dafrica-who-number-of-malaria-positive-cases-by-microscopy
Africa — WHO GHO: Number of malaria positive cases by microscopy | Africa (World Health Organization)
Size category: n<1K - Formats: parquet - Sector: health - Engineered by Electric Sheep Africa
TL;DR
This dataset is part of the Electric Sheep Africa catalog on Hugging Face. It is indexed for African data discovery with standardized metadata, loading guidance, provenance notes, and analyst-oriented context.
What This Dataset Covers
Health… See the full description on the dataset page: https://huggingface.co/datasets/electricsheepafrica/africa-who-number-of-malaria-positive-cases-by-microscopy.asia-who-number-of-malaria-suspects-examined-by-microscopy
Africa — WHO GHO: Number of malaria suspects examined by microscopy
Indicator code: MALARIA_MICR_TEST
HuggingFace slug: electricsheepafrica/asia-who-number-of-malaria-suspects-examined-by-microscopy
Source: WHO Global Health Observatory
License: CC BY 4.0 — WHO Open Data
Dataset Description
This dataset contains country-level observations for the WHO GHO indicator "Number of malaria suspects examined by microscopy" (MALARIA_MICR_TEST) across Asian nations, spanning… See the full description on the dataset page: https://huggingface.co/datasets/electricsheepasia/asia-who-number-of-malaria-suspects-examined-by-microscopy.asia-who-number-of-malaria-positive-cases-by-microscopy
Africa — WHO GHO: Number of malaria positive cases by microscopy
Indicator code: MALARIA_MICR_POS
HuggingFace slug: electricsheepafrica/asia-who-number-of-malaria-positive-cases-by-microscopy
Source: WHO Global Health Observatory
License: CC BY 4.0 — WHO Open Data
Dataset Description
This dataset contains country-level observations for the WHO GHO indicator "Number of malaria positive cases by microscopy" (MALARIA_MICR_POS) across Asian nations, spanning 2015–2024.… See the full description on the dataset page: https://huggingface.co/datasets/electricsheepasia/asia-who-number-of-malaria-positive-cases-by-microscopy.clip_microscopy_img_embeddingsmicroscopy-parasitesmicroscopy-datasets-index
Microscopy Datasets Index
I kept losing track of which microscopy datasets exist and what format they're in. So I made an index. 300+ open datasets, searchable by domain, task, microscopy type, and license.
What's in here
A single reference file (JSONL and Parquet) cataloging 309 publicly available microscopy datasets. Each entry includes:
id — short slug
name — human-readable dataset name
source — who published it (Broad Institute, Kaggle, ISBI, etc.)
url — direct link… See the full description on the dataset page: https://huggingface.co/datasets/Laborator/microscopy-datasets-index.