datasets
Training and evaluation data, with the modality, task and licence stated up front. Listed live from the Hugging Face Hub.
uniref50AF2_UniRef50AF2_UniRef50 is organized in LMDB format. If you want to load it, you have to first download it and then open the file using the lmdb package.
Here is an example of how you can get samples:
import lmdb
lmdb_dir = "/your/path/to/AF2_UniRef50/train"
with lmdb.open(lmdb_dir, readonly=True).begin() as txn:
length = int(txn.get('length'.encode()).decode())
for i in range(length):
data_str = txn.get(str(i).encode()).decode()
data = json.loads(data_str)
print(data)… See the full description on the dataset page: https://huggingface.co/datasets/westlake-repl/AF2_UniRef50.uniref90uniref30peptide_neg_uniref_50AF2_UniRef50AF2_UniRef50 is organized in LMDB format. If you want to load it, you have to first download it and then open the file using the lmdb package.
Here is an example of how you can get samples:
import lmdb
lmdb_dir = "/your/path/to/AF2_UniRef50/train"
with lmdb.open(lmdb_dir, readonly=True).begin() as txn:
length = int(txn.get('length'.encode()).decode())
for i in range(length):
data_str = txn.get(str(i).encode()).decode()
data = json.loads(data_str)
print(data)… See the full description on the dataset page: https://huggingface.co/datasets/attractiveboy/AF2_UniRef50.UniRef90-GPCR-ProteinsAll UniRef90 sequences of G-protein coupled receptors (GPCR) class proteins across all species. G-protein coupled receptors are evolutionarily related proteins and cell surface receptors that detect molecules outside the cell in Eukariotes.
Contains both confirmed and putative proteins.
uniref-croppedUniRef100_len_0_100UniRef50_len_0_100UniRef90_len_0_100