datasets
Training and evaluation data, with the modality, task and licence stated up front. Listed live from the Hugging Face Hub.
protein-pairs-uniprot-swissprot
Protein Pairs and Similarity
Selected protein similarities within training, test, and validation sets.
Each protein gets two similarities selected at random and (usually) proteins within the top and bottom quintiles for similarity.
The protein is represented by its UniProt ID and its amino acid sequence (using IUPAC-IUB codes where each amino acid maps to a letter of the alphabet, see: https://en.wikipedia.org/wiki/FASTA_format ).
The distance column is cosine distance (identical =… See the full description on the dataset page: https://huggingface.co/datasets/monsoon-nlp/protein-pairs-uniprot-swissprot.UniProt_Virus90rhea_uniprot_reaction_small
license: apache-2.0
task_categories:
translation
tags:
biology
chemistry
AI
size_categories:
10K<n<100K
uniprot_subcellular_localization
UniProt Subcellular Localization (Vertebrates) — ProVADA
A curated collection of vertebrate UniProt/Swiss‑Prot protein domains labeled for cytosolic and extracellular localization. We remove signal peptides, restrict domain lengths, and provide both the full set and a 30% identity‑clustered representative set with train/test/validation splits (70/20/10). This dataset underpins the subcellular localization oracle in ProVADA (preprint).
See the Files section for exact filenames and… See the full description on the dataset page: https://huggingface.co/datasets/Xiaowei0402/uniprot_subcellular_localization.UniProt_Human90UniProt-SecondaryStructureDatarhea_uniprot_reaction_largeeach reaction is designated with three difference enzymes
UniProt_function_text_descriptionsrhea_uniprot_reaction_large_superUniProt_Taxon50uniprot2025_03UniProt_Human_50UniProt_Ecoli_100UniProt_Virus_50UniProt_Human_90UniProt_Ecoli_90UniProt_Human_70UniProt_Virus_90UniProt_Virus_70preprocessed_uniprotkb_binary_label_1024_seq_lengthUniProt_Prokaryote_50