datasets
Training and evaluation data, with the modality, task and licence stated up front. Listed live from the Hugging Face Hub.
splatter-cube-pbmc3k
Splatter cube: controlled scRNA-seq variants with known cluster structure
180 simulated datasets: 60 parameter points x 3 seeds, each 2,000 cells x 16,085 genes with a known number of clusters.
Generated with splatter, with baseline
parameters estimated from real reference data rather than chosen by hand.
Files
data/pP_sS.h5ad -- counts (CSR). obs["Group"] holds the ground-truth cluster label.
metrics.csv -- one row per simulation: parameters, realised sparsity… See the full description on the dataset page: https://huggingface.co/datasets/btraven/splatter-cube-pbmc3k.10x-pbmc-5k