datasets
Training and evaluation data, with the modality, task and licence stated up front. Listed live from the Hugging Face Hub.
cross-species-translational-alignment
Cross-Species Translational Alignment — TG-GATEs + DrugMatrix × Tox21
Goal: build a training substrate for detecting subtle / pre-histopathological
toxicity signatures in animal transcriptome data, with mechanism-of-toxicity
labels attached. This directory contains the compound-level linkage layer:
every compound that has rat in-vivo perturbation data cross-referenced to Tox21
mechanism assays via standardized chemical identifiers.
Background — the hackathon
Built… See the full description on the dataset page: https://huggingface.co/datasets/Marcolini/cross-species-translational-alignment.cross_species_benchmarking**Repository: https://d-script.readthedocs.io/en/stable/data.html
**Reference: Sledzieski, S., Singh, R., Cowen, L. & Berger, B. D-SCRIPT translates genome to phenome with sequence-based, structure-aware, genome-scale predictions of protein-protein interactions. Cell Systems 12, 969-982.e6 (2021).
tree-species-vancouver-island
Vancouver Island Tree Species LiDAR Dataset
Dataset Description
4,040 labeled tree crowns extracted from airborne LiDAR point clouds for classifying tree species native to Vancouver Island and the Pacific Northwest. Each sample includes 25 engineered LiDAR features (height percentiles, intensity statistics, canopy structure metrics) plus a raw point cloud patch (.npy file), a species label, quality confidence scores, and train/val/test split assignment.… See the full description on the dataset page: https://huggingface.co/datasets/dfichuk/tree-species-vancouver-island.plant-multi-species-histone-modificationsThis is the fine-tune dataset for predicting three types of histone modification (H3K27ac, H3K27me3 and H3K4me3) in plants.
plant-multi-species-sequence-conservationThis is the fine-tune dataset for predicting sequence conservation in plants.
plant-multi-species-open-chromatinThis is the fine-tune dataset for predicting open chromatin in plants.
plant-multi-species-promoter-strengthThis is the fine-tune dataset for predicting promoter strength in two validation systems (tobacco leaves and maize protoplasts) in plants.
plant-multi-species-lncRNAsThis is the fine-tune dataset for predicting long non-coding RNAs (lncRNAs) in plants.
plant-multi-species-terminator-strengthplant-multi-species-core-promotersThis is the fine-tune dataset for predicting active core promoters in plants.
marine-species-zh
海纳海洋生物数据集 | Marine Species Dataset (Chinese)
4662 个海洋物种的结构化数据集：学名、中文俗名、完整分类阶元、命名人、OBIS 分布记录数、图片链接（逐行标注授权协议与作者署名）、中文简介。
A structured dataset of 4,662 marine species: scientific names, Chinese vernacular names, full taxonomy, authorities, OBIS occurrence counts, image links (with per-row license and author attribution), and 2,120 Chinese descriptions translated/organized from Chinese Wikipedia.
数据来自海洋科普公益平台 海纳 · hainahub.cn 的物种图鉴底层，随图鉴扩容滚动更新。
数据规模 / Stats
指标… See the full description on the dataset page: https://huggingface.co/datasets/hainahub/marine-species-zh.cross_species_leaf_absolute_translationcross_species_leaf_on_off_translationtree-species-vancouver-island-v2tree-species-high-accuracy-psp
High-Accuracy LiDAR-backed PSP Dataset
High-accuracy PSP subset with LiDAR-backed patches.
Size
5,737 LiDAR-backed high-coordinate-accuracy PSP tree samples
Species counts
BA: 36
CW: 1,362
DR: 557
FD: 651
HW: 2,776
MB: 52
SS: 303
Coordinate reliability filtering
Coordinate tiers follow the source PSP coordinate provenance:
High: DGPS, PPP
Medium: RGPS, VGPS
Low: MAP, GIS, GE, PREVIOUS, INTENDED, UNKNOWN, missing, or unrecognized… See the full description on the dataset page: https://huggingface.co/datasets/dfichuk/tree-species-high-accuracy-psp.Coding_Sequences_13_Speciesstarwars_speciesworm_species
Worm Species Dataset (CSV)
Description
This dataset contains various species and types of worms (uod), including soil worms, larvae, and parasitic worms.
It is suitable for education, research, and machine learning practice.
Files
worm_species.csv
LICENSE (MIT)
Columns
worm_name – Common name
scientific_name – Scientific name
category – Type or classification
common_use – Usage or relevance
habitat – Typical habitat
License
MIT License… See the full description on the dataset page: https://huggingface.co/datasets/jomarie04/worm_species.Global_Eagle_Species_DatasetThis dataset is released under the MIT License. You are free to use, modify, merge, publish, distribute, sublicense, and/or sell copies of the data, provided that proper attribution is given. The data is intended for educational, research, and non-commercial or commercial use.
Species-GBIFGlobal_Primate_Species_DatasetThis dataset is released under the MIT License. You are free to use, modify, merge, publish, distribute, sublicense, and/or sell copies of the data, provided that proper attribution is given. The dataset is intended for educational, research, and commercial use.
philippine_bat_species
Philippine Bat Species Dataset
This dataset contains bat species found in the Philippines, including endemic and non-endemic species.
Columns
id – unique identifier
common_name – common English name
scientific_name – scientific name
local_name – Filipino/local name (if available)
diet – feeding type
habitat – typical habitat
wingspan_cm – average wingspan in centimeters
average_weight_g – average body weight in grams
conservation_status – IUCN status
endemic_to_ph –… See the full description on the dataset page: https://huggingface.co/datasets/jomarie04/philippine_bat_species.