datasets
Training and evaluation data, with the modality, task and licence stated up front. Listed live from the Hugging Face Hub.
NexusMancer-bioai-easykit-gears-cache
GEARS go_essential_all Cache
This dataset provides the pre-computed go_essential_all cache required by the GEARS model.
It is part of the NexusMancer-bioai-easykit project to make it easy for everyone to run GEARS without manually generating the cache.
📁 File List
go_essential_all.csv
essential_all_data_pert_genes.pkl
gene2go_all.pkl
go_essential_all.tar.gz
norman_coexpression.csv
All files are placed under the gears_cache/go_essential_all/ folder structure.
🚀… See the full description on the dataset page: https://huggingface.co/datasets/NexusMancer/NexusMancer-bioai-easykit-gears-cache.mg-s2-gears-pretrained
GEARS pre-trained checkpoint + Norman 2019 training data
These data are not produced by this project. They are cached here for
reproducible benchmarking.
Original source
Field
Value
Citation
Roohani et al., 2024 (GEARS); Norman et al., 2019 (data)
License
MIT (GEARS code); see Norman et al. for data
Download
https://github.com/snap-stanford/GEARS
Contents
Subdirectories included:
pre-trained-checkpoints/gears/ -- config.pkl… See the full description on the dataset page: https://huggingface.co/datasets/MClarke1991/mg-s2-gears-pretrained.