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Training and evaluation data, with the modality, task and licence stated up front. Listed live from the Hugging Face Hub.

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01AI4Protein /DeepLocMulti_ESMFold DeepLocMulti Dataset with ESMFold Structural Sequence Description: Protein localization encompasses the processes that establish and maintain proteins at specific locations. Number of labels: 10 Problem Type: single_label_classification Columns: aa_seq: protein amino acid sequence foldseek_seq: foldseek 20 3di structural sequence ss8_seq: DSSP 8 secondary structure sequence location: Specific location Github Simple, Efficient and Scalable Structure-aware Adapter… See the full description on the dataset page: https://huggingface.co/datasets/AI4Protein/DeepLocMulti_ESMFold.texttext-classification10K<n<100K0 likes92 downloads1y agoHugging Face02AI4Protein /GO_MF_ESMFold GO-MF Dataset with ESMFold Structural Sequence Description: Molecular Function of Gene Ontology (GO) project. Number of labels: 489 Problem Type: multi_label_classification Columns: aa_seq: protein amino acid sequence foldseek_seq: foldseek 20 3di structural sequence ss8_seq: DSSP 8 secondary structure sequence Github Simple, Efficient and Scalable Structure-aware Adapter Boosts Protein Language Models https://github.com/tyang816/SES-Adapter VenusFactory: A Unified… See the full description on the dataset page: https://huggingface.co/datasets/AI4Protein/GO_MF_ESMFold.texttext-classification10K<n<100K0 likes83 downloads1y agoHugging Face03AI4Protein /Thermostability_ESMFold Thermostability Dataset with ESMFold Structural Sequence Description: In materials science and molecular biology, thermostability is the ability of a substance to resist irreversible change in its chemical or physical structure, often by resisting decomposition or polymerization, at a high relative temperature. Number of labels: 1 Problem Type: regression Columns: aa_seq: protein amino acid sequence foldseek_seq: foldseek 20 3di structural sequence ss8_seq: DSSP 8 secondary… See the full description on the dataset page: https://huggingface.co/datasets/AI4Protein/Thermostability_ESMFold.tabulartext-classification1K<n<10K0 likes82 downloads1y agoHugging Face04AI4Protein /MetalIonBinding_ESMFold MetalIonBinding Dataset with ESMFold Structural Sequence Description: Metal-binding proteins are proteins or protein domains that chelate a metal ion. Number of labels: 2 Problem Type: single_label_classification Columns: aa_seq: protein amino acid sequence foldseek_seq: foldseek 20 3di structural sequence ss8_seq: DSSP 8 secondary structure sequence ss3_seq: DSSP 3 secondary structure sequence esm3_structure_seq: ESM3 structure sequence encoded by VQ-VAE Github… See the full description on the dataset page: https://huggingface.co/datasets/AI4Protein/MetalIonBinding_ESMFold.texttext-classification1K<n<10K0 likes80 downloads1y agoHugging Face05AI4Protein /GO_BP_ESMFold GO-BP Dataset with ESMFold Structural Sequence Description: Biological Process of Gene Ontology (GO) project. Number of labels: 1943 Problem Type: multi_label_classification Columns: aa_seq: protein amino acid sequence foldseek_seq: foldseek 20 3di structural sequence ss8_seq: DSSP 8 secondary structure sequence Github Simple, Efficient and Scalable Structure-aware Adapter Boosts Protein Language Models https://github.com/tyang816/SES-Adapter VenusFactory: A Unified… See the full description on the dataset page: https://huggingface.co/datasets/AI4Protein/GO_BP_ESMFold.texttext-classification10K<n<100K0 likes72 downloads1y agoHugging Face06AI4Protein /DeepLocBinary_ESMFold DeepLocBinary Dataset with ESMFold Structural Sequence Description: Protein localization encompasses the processes that establish and maintain proteins at specific locations. Number of labels: 2 Problem Type: single_label_classification Columns: aa_seq: protein amino acid sequence foldseek_seq: foldseek 20 3di structural sequence ss8_seq: DSSP 8 secondary structure sequence location: On the membrane or not Github Simple, Efficient and Scalable Structure-aware… See the full description on the dataset page: https://huggingface.co/datasets/AI4Protein/DeepLocBinary_ESMFold.texttext-classification1K<n<10K0 likes53 downloads1y agoHugging Face07AI4Protein /GO_CC_ESMFold GO-CC Dataset with ESMFold Structural Sequence Description: Cellular Component of Gene Ontology (GO) project. Number of labels: 320 Problem Type: multi_label_classification Columns: aa_seq: protein amino acid sequence foldseek_seq: foldseek 20 3di structural sequence ss8_seq: DSSP 8 secondary structure sequence Github Simple, Efficient and Scalable Structure-aware Adapter Boosts Protein Language Models https://github.com/tyang816/SES-Adapter VenusFactory: A Unified… See the full description on the dataset page: https://huggingface.co/datasets/AI4Protein/GO_CC_ESMFold.texttext-classification10K<n<100K0 likes51 downloads1y agoHugging Face08AI4Protein /DeepSol_ESMFold DeepSol Dataset with ESMFold Structural Sequence Description: Solubility is a fundamental protein property that has important connotations for therapeutics and use in diagnosis. Number of labels: 2 Problem Type: single_label_classification Columns: aa_seq: protein amino acid sequence foldseek_seq: foldseek 20 3di structural sequence ss8_seq: DSSP 8 secondary structure sequence Github Simple, Efficient and Scalable Structure-aware Adapter Boosts Protein Language… See the full description on the dataset page: https://huggingface.co/datasets/AI4Protein/DeepSol_ESMFold.tabulartext-classification10K<n<100K1 likes46 downloads1y agoHugging Face09AI4Protein /EC_ESMFold EC Dataset with ESMFold Structural Sequence Description: The Enzyme Commission number (EC number) is a numerical classification scheme for enzymes, based on the chemical reactions they catalyze. Number of labels: 585 Problem Type: multi_label_classification Columns: aa_seq: protein amino acid sequence foldseek_seq: foldseek 20 3di structural sequence ss8_seq: DSSP 8 secondary structure sequence Github Simple, Efficient and Scalable Structure-aware Adapter Boosts… See the full description on the dataset page: https://huggingface.co/datasets/AI4Protein/EC_ESMFold.texttext-classification10K<n<100K0 likes36 downloads1y agoHugging Face10AI4Protein /ProtSolM_ESMFold ProtSolM PDB Dataset (PDBSol) Description: Solubility is a fundamental protein property that has important connotations for therapeutics and use in diagnosis. Number of labels: 2 Problem Type: single_label_classification Columns: aa_seq: protein amino acid sequence detail: meta information Github ProtSolM: Protein Solubility Prediction with Multi-modal Features https://github.com/tyang816/ProtSolM VenusFactory: A Unified Platform for Protein Engineering Data Retrieval… See the full description on the dataset page: https://huggingface.co/datasets/AI4Protein/ProtSolM_ESMFold.tabulartext-classification10K<n<100K0 likes33 downloads1y agoHugging Face11AI4Protein /DeepET_Topt_ESMFold DeepET_Topt Dataset Description: protein optimum temperature. Number of labels: 1 Problem Type: regression Columns: aa_seq: protein amino acid sequence ss8_seq: DSSP 8 secondary structure sequence foldseek_seq: foldseek 20 3di structural sequence ss3_seq: DSSP 3 secondary structure sequence Github VenusFactory: A Unified Platform for Protein Engineering Data Retrieval and Language Model Fine-Tuning https://github.com/ai4protein/VenusFactory Citation Please… See the full description on the dataset page: https://huggingface.co/datasets/AI4Protein/DeepET_Topt_ESMFold.tabulartext-classification1K<n<10K0 likes25 downloads1y agoHugging Face12AI4Protein /DeepSoluE_ESMFold DeepSoluE Dataset with ESMFold Structural Sequence Description: Solubility is a fundamental protein property that has important connotations for therapeutics and use in diagnosis. Number of labels: 2 Problem Type: single_label_classification Columns: aa_seq: protein amino acid sequence foldseek_seq: foldseek 20 3di structural sequence ss8_seq: DSSP 8 secondary structure sequence Github Simple, Efficient and Scalable Structure-aware Adapter Boosts Protein Language… See the full description on the dataset page: https://huggingface.co/datasets/AI4Protein/DeepSoluE_ESMFold.tabulartext-classification10K<n<100K0 likes22 downloads1y agoHugging Face13AI4Protein /VenusVaccine_BacteriaBinary_ESMFoldtext1K<n<10K0 likes7 downloads1y agoHugging Face14AI4Protein /eSOL_ESMFold eSOL Dataset Description: Solubility is a fundamental protein property that has important connotations for therapeutics and use in diagnosis. Number of labels: 1 Problem Type: regression Columns: aa_seq: protein amino acid sequence ss8_seq: DSSP 8 secondary structure sequence foldseek_seq: foldseek 20 3di structural sequence ss3_seq: DSSP 3 secondary structure sequence Github VenusFactory: A Unified Platform for Protein Engineering Data Retrieval and Language… See the full description on the dataset page: https://huggingface.co/datasets/AI4Protein/eSOL_ESMFold.tabulartext-classification1K<n<10K0 likes6 downloads1y agoHugging Face15AI4Protein /VenusVaccine_VirusBinary_ESMFoldtext1K<n<10K0 likes4 downloads1y agoHugging Face16AI4Protein /VenusVaccine_TumorBinary_ESMFoldtextn<1K0 likes3 downloads1y agoHugging Face

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