datasets
Training and evaluation data, with the modality, task and licence stated up front. Listed live from the Hugging Face Hub.
TCGA-PANCAN-HiSeq-2770x20530gene expression cancer RNA-Seq - Check the original submission: - https://www.synapse.org/Synapse:syn2812925 - is maintained by the cancer genome atlas pan-cancer analysis project. - TCGA-PANCAN-HiSeq-2770x20530
Files combined:
unc.edu_BRCA_IlluminaHiSeq_RNASeqV2.geneExp (20530, 957) BRCA
unc.edu_KIRC_IlluminaHiSeq_RNASeqV2.geneExp (20530, 552) KIRC
unc.edu_LUAD_IlluminaHiSeq_RNASeqV2.geneExp (20530, 413) LUAD
unc.edu_THCA_IlluminaHiSeq_RNASeqV2.geneExp (20530, 471) THCA… See the full description on the dataset page: https://huggingface.co/datasets/Fllamber/TCGA-PANCAN-HiSeq-2770x20530.TCGA-OV-AS
The Cancer Genome Atlas Ovarian Cancer for Ascites Segmentation (TCGA-OV-AS)
This dataset was curated as part of the research 'Deep Learning Segmentation of Ascites on Abdominal CT Scans for Automatic Volume Quantification' (Paper, arXiv).
To replicate TCGA-OV-AS, please download TCGA-OV from TCIA using the Descriptive Directory Name download option.
Converting Images
Convert the DICOMs to NIFTI format using dcm2niix and GNU parallel.
Create the directory structure… See the full description on the dataset page: https://huggingface.co/datasets/farrell236/TCGA-OV-AS.TCGA_BRCA_DatasetTCGA-Cancer-Variant-and-Clinical-Data
TCGA Cancer Variant and Clinical Data
Dataset Description
This dataset combines genetic variant information at the protein level with clinical data from The Cancer Genome Atlas (TCGA) project, curated by the International Cancer Genome Consortium (ICGC). It provides a comprehensive view of protein-altering mutations and clinical characteristics across various cancer types.
Dataset Summary
The dataset includes:
Protein sequence data for both mutated and… See the full description on the dataset page: https://huggingface.co/datasets/seq-to-pheno/TCGA-Cancer-Variant-and-Clinical-Data.tcga-hnscc-hpv-negative-scaled-gene-expressionTCGA-SARC-dict-tumorTCGA-Cancer-Variant-and-Clinical-Data
TCGA Cancer Variant and Clinical Data
Dataset Description
This dataset combines genetic variant information at the protein level with clinical data from The Cancer Genome Atlas (TCGA) project, curated by the International Cancer Genome Consortium (ICGC). It provides a comprehensive view of protein-altering mutations and clinical characteristics across various cancer types.
Dataset Summary
The dataset includes:
Protein sequence data for both mutated and… See the full description on the dataset page: https://huggingface.co/datasets/hammad655/TCGA-Cancer-Variant-and-Clinical-Data.tcga-path-notesTCGA_Reports.csv: cleaned text extracted from TCGA reports. From Kefeli et al.
mmc1.xlsx: Survival data for TCGA. From Liu et al.
tcga-paad-ground-truth