wakamex/github
02.7k
1[{"node": {"oid": "0b45a16ee2017af6ac3d8cebbbb613760983d6ae", "messageHeadline": "Merge pull request #167 from OceanBioME/ncc/add-dois", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 10, "deletions": 8}}, {"node": {"oid": "97d46c88c74ae7a51a56d231a5af40ca60769dce", "messageHeadline": "add dois", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 10, "deletions": 8}}, {"node": {"oid": "a006207db47db16e6e0470676acdbc4a714c55f0", "messageHeadline": "Merge pull request #164 from OceanBioME/jsw/data-assimilaiton-example", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 760, "deletions": 377}}, {"node": {"oid": "a055a6bab9723eff64c24e725148ae3f930fe80e", "messageHeadline": "remove size limit", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 2}}, {"node": {"oid": "38decc90ddf3469d8b98d810182ace4b8d536e91", "messageHeadline": "removed comment line", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 0, "deletions": 1}}, {"node": {"oid": "f38f3093ce83741af4fcf14297bf71b1452823b1", "messageHeadline": "code beautification", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 18, "deletions": 18}}, {"node": {"oid": "6bf0a364908a0f5be14942458e8201dbff3834eb", "messageHeadline": "resolve deps", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "6f7fc4152556f482435c80e0c3c53e903033fb78", "messageHeadline": "add EnsembleKalmanProcesses compat entry", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 0}}, {"node": {"oid": "1cb981f4db617b5e5f3ee1158c45d6be57608744", "messageHeadline": "drop Documenter from main dep", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 70}}, {"node": {"oid": "5ef75f9cc115dbb6fbc6f1b481ba7fd845014f17", "messageHeadline": "resolve deps", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 72, "deletions": 44}}, {"node": {"oid": "a78a495a502d24f3293051f96daf4d84d2e1f918", "messageHeadline": "add compat entry for CUDA", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 0}}, {"node": {"oid": "9b8bdd2c7850d0141445425afa681cb727243962", "messageHeadline": "add data_assimilation example", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 4, "deletions": 5}}, {"node": {"oid": "bde9fce91d3f5327a38103b272e9b0303672202b", "messageHeadline": "oops part 2", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "304db868a3f08a867baeef9f66704e3aba9f4c76", "messageHeadline": "oops", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "9b253232383d6925d1eabc5ea7f704b1ac69e513", "messageHeadline": "work around", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 6, "deletions": 2}}, {"node": {"oid": "27354aca34240e13907bf4648843a7189d4ece2a", "messageHeadline": "added size limit back to see whats going wrong now", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 5, "deletions": 4}}, {"node": {"oid": "e23cf64d928eafaf2bc4f8c29b752b209c04c6cc", "messageHeadline": "typo (I think)", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "67cb41e21965115d8b1621fd6cd63a98138ab5bd", "messageHeadline": "remove size limit", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 2}}, {"node": {"oid": "57726f9badea9febfdb7d902cc08b403d04cdae4", "messageHeadline": "update interpolation syntax", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 59, "deletions": 34}}, {"node": {"oid": "9baa4ddb4c013fa27f514965a16a0fd803d6beba", "messageHeadline": "resolve deps", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 69, "deletions": 1}}, {"node": {"oid": "8ce402c19f3410a31e941bf00437916bfa1050f7", "messageHeadline": "add space", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "c7d6249302b1ffac2404416ac0772180e3f6cd8b", "messageHeadline": "change syntax for fractional indices", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 3, "deletions": 3}}, {"node": {"oid": "2d5220a7a12ed38eae9a9348f7323c71bc5205e5", "messageHeadline": "remove debugging show statement", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "078e4891987ab8b823f3155b85b2a2d1098a8509", "messageHeadline": "add compat for Oceananigans v0.90.6", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 6, "deletions": 4}}, {"node": {"oid": "45177f09450c599a03f0b523af4bf84ff09f344c", "messageHeadline": "change syntax for fractional indices", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "5f88c169e555797a69e345f982b2ae6f938c6566", "messageHeadline": "more verbose", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 3, "deletions": 3}}, {"node": {"oid": "496d27c4753a8f150bfb9ba90d480be64b4de394", "messageHeadline": "minor code cleanup", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 10, "deletions": 10}}, {"node": {"oid": "33f80ca488906b92ca2b764a0caeebee9fb5be38", "messageHeadline": "use Oceananigans v0.90.6", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 7, "deletions": 7}}, {"node": {"oid": "2a485f4217a579420797bceea19b5f18d0e8cbf3", "messageHeadline": "docs project wasn't up to date maybe", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "a4dd896354ae763636f32b13e15edbfdedd315be", "messageHeadline": "attempt to filter out warnings", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "1de02d0b962e9918938685331798c773f13ec1df", "messageHeadline": "removed size limit again", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 1}}, {"node": {"oid": "c497f5bbd3947aaac151f8ecef4b101f4cdd055d", "messageHeadline": "pinned jld2 version in docs to hopefully fix error", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "7effdb0b498b562b77c8080b4f75f6e7e0e3f099", "messageHeadline": "temporatily increase size threshold to see whats going on", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 1}}, {"node": {"oid": "3d7430d18d6ed8d82cdbad75aeaf48fce39598fb", "messageHeadline": "Update examples/data_assimilation.jl", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 1}}, {"node": {"oid": "496158beb7b8c8820a8a93a2d72c789e951df1f0", "messageHeadline": "fix model implementation", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 13, "deletions": 23}}, {"node": {"oid": "47868227b16c16ed2caf6edf8c13c18edae7958e", "messageHeadline": "docs make correction", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "e0d9efce7737d8c23383f1e60c70dfc9f84aa4da", "messageHeadline": "fix make", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 0}}, {"node": {"oid": "cbd034d49d1ee7ca777131397bcf70833dc8c2d6", "messageHeadline": "updated box model docstring", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 25, "deletions": 1571}}, {"node": {"oid": "a756086998952b0cddf808390f85a521e3e1d756", "messageHeadline": "Apply suggestions from code review", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 8, "deletions": 8}}, {"node": {"oid": "93b6f5b12db13ec0c5eb9424df45b9730cdfbaef", "messageHeadline": "another docs fix", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 3, "deletions": 3}}, {"node": {"oid": "9cf0c034bc71034bf08e9b6551563c14de06f980", "messageHeadline": "attempt to make docs project work", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 3, "deletions": 0}}, {"node": {"oid": "3931fedd791d2a8c582eb46dafe02fe39ec2bf1a", "messageHeadline": "fixed box example", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 4, "deletions": 3}}, {"node": {"oid": "0b946f568ff68a99f7d41faf400497cceaba5709", "messageHeadline": "oops", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 7, "deletions": 6}}, {"node": {"oid": "2ccbab53a5ff0444315c586fbb508fe21331e1bc", "messageHeadline": "updated box model example", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 15, "deletions": 28}}, {"node": {"oid": "2e8f9f31b1c0950d5de8659926466375f3b73fc4", "messageHeadline": "overhaul of box model", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 139, "deletions": 130}}, {"node": {"oid": "6dad1c612097284d2487b67b9986169f99dda8cb", "messageHeadline": "Changed `model` funciton name", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 10, "deletions": 10}}, {"node": {"oid": "5fa7f41728d7b29fe68950ee320b89a75808401f", "messageHeadline": "mentioned that its a box model", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "6de12818363447b393743a8439b091cc7b9f4e21", "messageHeadline": "moved to example", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 445, "deletions": 115}}, {"node": {"oid": "8df382211d077ebb5165dff3322b3f59457af6b7", "messageHeadline": "Merge branch 'main' into jsw/data-assimilaiton-example", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 12, "deletions": 11}}, {"node": {"oid": "33f7d2eecd1911a28e1e7591b536a7fd08419e47", "messageHeadline": "Added data assimilation example", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1546, "deletions": 0}}, {"node": {"oid": "4b7b1202c99107d7475a84feb7bd5b084b229f4d", "messageHeadline": "Merge pull request #162 from OceanBioME/jsw/add-time-to-sediment-tend\u2026", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 12, "deletions": 10}}, {"node": {"oid": "d3c1124f492254cc41aaec9d9491d4c805b8579f", "messageHeadline": "Merge branch 'main' into jsw/add-time-to-sediment-tendency-calculation", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 0, "deletions": 1}}, {"node": {"oid": "52a04f23be0af20f0ece61234533b4c9d4593874", "messageHeadline": "maybe it'll work now", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 0, "deletions": 2}}, {"node": {"oid": "cf0fadd26f892e9462e3d6aa1d8f2b0a775f063d", "messageHeadline": "maybe it'll work now", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 7, "deletions": 2}}, {"node": {"oid": "1b02b7ac7e8e90c93fa6dce4a008974c93504a72", "messageHeadline": "moved dispathcing to not a kernel to hopefully make it so we can writ\u2026", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 6, "deletions": 8}}, {"node": {"oid": "7ff7c0ced123bfa6e7e3e74815c2762c0d5d8d59", "messageHeadline": "added passing of time to sediment tendency calculation", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 5, "deletions": 4}}, {"node": {"oid": "a947be165aa3ac27215e8bbb229aa29e68c54696", "messageHeadline": "Merge pull request #161 from OceanBioME/jsw/example-comment", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 0, "deletions": 1}}, {"node": {"oid": "e0832a2a09759c79715f46cad809976fb70dde44", "messageHeadline": "Removed old comment from example", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 0, "deletions": 1}}, {"node": {"oid": "d5f3fb6ce6f6fd045786cb71d57c4400c8fe9b13", "messageHeadline": "Merge pull request #160 from OceanBioME/jsw/update-readme-video", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "beac42a6e10152fb62a4ec4ce90c3c0a3564ce0a", "messageHeadline": "Update video in readme", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "e7d5d0d45358638b828e4fc2d54a07b454248814", "messageHeadline": "Merge pull request #159 from OceanBioME/jsw/auto-gpu-testing", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 64, "deletions": 92}}, {"node": {"oid": "8960eecef8191d0320b8c516d2950e28376ccecf", "messageHeadline": "bump patch number for bug fix", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "cceacf6c95afee84fc8dce3fbae955c51a62533e", "messageHeadline": "trigger new commit", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "0ff2d503837395542af8e4f25816ba4d6e6c56bb", "messageHeadline": "Update .buildkite/pipeline.yml", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "09c49ae63296368e8c807a60f334bdab7ad66d1e", "messageHeadline": "attempt to fix status labels", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 15, "deletions": 0}}, {"node": {"oid": "76712688fb0930619014ef969f12f2795953295f", "messageHeadline": "added pipeline", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 44, "deletions": 0}}, {"node": {"oid": "0385314f318dea8b37c697ca62f69b0ee093d4d3", "messageHeadline": "updated badges", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 3, "deletions": 5}}, {"node": {"oid": "ae6cc7cec705c816b493eaf98641583c9ffd80d3", "messageHeadline": "Remove old workflows", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 0, "deletions": 84}}, {"node": {"oid": "1a28bf22b0eaeec1dc0efde9361858599413c9cc", "messageHeadline": "Merge branch 'main' into jsw/auto-gpu-testing", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 17, "deletions": 17}}, {"node": {"oid": "54b4078b79193719a5a05de589390d535da859dd", "messageHeadline": "Merge pull request #158 from OceanBioME/jsw/spelling", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 17, "deletions": 17}}, {"node": {"oid": "cdb4ad89a4dd7c0f4cd33e69e3192540046b6f73", "messageHeadline": "add buildkite badge", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 0}}, {"node": {"oid": "53a966dd0093631eaba93d34952fc49711584415", "messageHeadline": "Forgot fields don't take their meta data with them on GPU", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 3}}, {"node": {"oid": "233ac5afca3ab90a2db1800b469f436d51556337", "messageHeadline": "no idea how we've missed this one", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 17, "deletions": 17}}, {"node": {"oid": "be8c0bebe935df2877edaedd2e6535ff2cc830ca", "messageHeadline": "Merge pull request #155 from pitmonticone/main", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 81, "deletions": 82}}, {"node": {"oid": "74cdc7387654f0e5e1989a5ca5fed43c20db55de", "messageHeadline": "Merge branch 'main' into main", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 135, "deletions": 262}}, {"node": {"oid": "8d3a3558e28a91bdef2d9ae009183834bdb8b565", "messageHeadline": "Merge pull request #157 from OceanBioME/jsw/bump-oceananigans-0.90", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 59, "deletions": 39}}, {"node": {"oid": "f610b335de4342a6ff24ef8b6d1f041794a66430", "messageHeadline": "Merge branch 'main' into jsw/bump-oceananigans-0.90", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 37, "deletions": 39}}, {"node": {"oid": "f677df59bb31027248e3a24cd2b50fb4e2be5d3d", "messageHeadline": "Merge pull request #156 from OceanBioME/jsw/fix-shows", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 37, "deletions": 39}}, {"node": {"oid": "1658ddf40c5c3c5e10f7a3438e518c0a58953c48", "messageHeadline": "updated docstrings", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 6, "deletions": 3}}, {"node": {"oid": "dc24e133a95bd6374700aa6ed6905dd971de22d0", "messageHeadline": "changed bad function name", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "09b161f76cb2f6aaf80f6e66bec378bedf51a709", "messageHeadline": "improved `summary` and `show` for BGC models and added `modifiers` to\u2026", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 26, "deletions": 12}}, {"node": {"oid": "476ad87224a5ae8d26ab61ea76445fbe216c4936", "messageHeadline": "removed `Relaxation` since it temporarily doesn't work", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "b62b8195c1f7def4439bcee0aa8cfd24ec218a90", "messageHeadline": "fix winking speed function", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "a2bb048b6814831530793c9af5be9ab3e2837cd0", "messageHeadline": "add missing import", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "389e2396d2c6d21b0d40bb9d30f8d1027d98a99c", "messageHeadline": "more type stable", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "517b777807a19ac25b24b5a720c957236597181e", "messageHeadline": "drop y-dependance since it's flat", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 6, "deletions": 6}}, {"node": {"oid": "c6e098f211a4765d50b3a4b1c110a248c9a3a619", "messageHeadline": "bump up compat entry for Documenter", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "9976843c777aa90ea3d40f6873dd9652ec1727b3", "messageHeadline": "fix doctest", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 0, "deletions": 4}}, {"node": {"oid": "a74765e566efd5ad21029fe21a27c6cbd464cb0d", "messageHeadline": "fix show methods in doctests", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 0, "deletions": 14}}, {"node": {"oid": "0b26ce38ee1d85048da36a06fa7bcb1e369872ca", "messageHeadline": "updated docs compats", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "34819bfefe123629a9e012487847c754e250c450", "messageHeadline": "forgot import", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "3cad4fe5ee241928959aff4bd52492c4bdb7d577", "messageHeadline": "fixed a load of surface PAR functions", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 13, "deletions": 11}}, {"node": {"oid": "9471702253b81ebdf25a0978987d3e8517a7664a", "messageHeadline": "fixed old `individuals` docs page", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 14, "deletions": 8}}, {"node": {"oid": "c392154a2cfa40622143c7aa728b0f8b3155ee28", "messageHeadline": "fixed light attenuation", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 11, "deletions": 5}}, {"node": {"oid": "132523c2e40c149da5090415660b490c704b45b2", "messageHeadline": "bumped version", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 10, "deletions": 4}}, {"node": {"oid": "5a0742ab867c26dc30cc68ce750812d4f9b96d87", "messageHeadline": "tidying", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 2}}, {"node": {"oid": "d13cb0f4541dbb6f20e298f906c492a0f857edc9", "messageHeadline": "fix example", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "027f171e5d7bc6aad2238774a12e076a7a77153c", "messageHeadline": "Merge branch 'main' of github.com:pitmonticone/OceanBioME.jl", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "8f074e8b259504727a74d50673d719f409e76e52", "messageHeadline": "bump up Oceananigans compat to v0.90", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "2800ac4bacd41eb9300737df0a4f2d93c64f0045", "messageHeadline": "rephrase citation to specific version", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "fc8ce03117e78f53827b76d84d3008566f66177f", "messageHeadline": "up to Oceananigans v0.90.1", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 202, "deletions": 58}}, {"node": {"oid": "9acac7e39b9af77b7cf2526d38fe18f1fb0a6613", "messageHeadline": "Update docs/src/model_components/individuals/slatissima.md", "author": {"name": "Pietro Monticone", "email": "38562595+pitmonticone@users.noreply.github.com", "user": {"login": "pitmonticone"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "c32d7eedb1db91c6f509b5c3262fda4d9c170750", "messageHeadline": "Update docs/src/model_components/individuals/slatissima.md", "author": {"name": "Pietro Monticone", "email": "38562595+pitmonticone@users.noreply.github.com", "user": {"login": "pitmonticone"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "ebd50204a75a74f9886c47de1ee352d2f23359f4", "messageHeadline": "Update docs/src/model_components/biogeochemical/LOBSTER.md", "author": {"name": "Pietro Monticone", "email": "38562595+pitmonticone@users.noreply.github.com", "user": {"login": "pitmonticone"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "c9c2827a96e271219b30c869bf3210aaa45338bc", "messageHeadline": "Update docs/src/model_components/biogeochemical/LOBSTER.md", "author": {"name": "Pietro Monticone", "email": "38562595+pitmonticone@users.noreply.github.com", "user": {"login": "pitmonticone"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "c1a1dc86e7fc3315d3d0a8dc19e3eb770fc33725", "messageHeadline": "Update docs/src/model_components/biogeochemical/LOBSTER.md", "author": {"name": "Pietro Monticone", "email": "38562595+pitmonticone@users.noreply.github.com", "user": {"login": "pitmonticone"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "1b778836d6f3b002b8d3feeaba2e00a81ed03fd4", "messageHeadline": "Update instant_remineralisation.md", "author": {"name": "Pietro Monticone", "email": "38562595+pitmonticone@users.noreply.github.com", "user": {"login": "pitmonticone"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "1f0e3c9df21e53d1cbc82955d1c3fbb92eb7163f", "messageHeadline": "Update instant_remineralization.jl", "author": {"name": "Pietro Monticone", "email": "38562595+pitmonticone@users.noreply.github.com", "user": {"login": "pitmonticone"}}, "additions": 8, "deletions": 8}}, {"node": {"oid": "e22107ec61921aac86b1acc313096bd0ccfb3e54", "messageHeadline": "Update carbonate_chemistry.jl", "author": {"name": "Pietro Monticone", "email": "38562595+pitmonticone@users.noreply.github.com", "user": {"login": "pitmonticone"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "58aad279556e6df1552b9334f12f3d35505ef0d6", "messageHeadline": "Update core.jl", "author": {"name": "Pietro Monticone", "email": "38562595+pitmonticone@users.noreply.github.com", "user": {"login": "pitmonticone"}}, "additions": 4, "deletions": 4}}, {"node": {"oid": "eb09a4fb01cc4184397717fa2c5852db9717a96f", "messageHeadline": "Update fallbacks.jl", "author": {"name": "Pietro Monticone", "email": "38562595+pitmonticone@users.noreply.github.com", "user": {"login": "pitmonticone"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "fad942a9a12700348bb42ab2f85df41c734fe0fc", "messageHeadline": "Update LOBSTER.jl", "author": {"name": "Pietro Monticone", "email": "38562595+pitmonticone@users.noreply.github.com", "user": {"login": "pitmonticone"}}, "additions": 35, "deletions": 35}}, {"node": {"oid": "fbbd88b343789bb7374ed9c2d3b6ecf4078a287e", "messageHeadline": "Update oxygen_chemistry.jl", "author": {"name": "Pietro Monticone", "email": "38562595+pitmonticone@users.noreply.github.com", "user": {"login": "pitmonticone"}}, "additions": 3, "deletions": 3}}, {"node": {"oid": "4553559b21934900816552371fd49e7cd13e9dc7", "messageHeadline": "Update NPZD.jl", "author": {"name": "Pietro Monticone", "email": "38562595+pitmonticone@users.noreply.github.com", "user": {"login": "pitmonticone"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "095a318002c0f7960cd05f1b87efbfa86d2f8b12", "messageHeadline": "Update SLatissima.jl", "author": {"name": "Pietro Monticone", "email": "38562595+pitmonticone@users.noreply.github.com", "user": {"login": "pitmonticone"}}, "additions": 11, "deletions": 11}}, {"node": {"oid": "223a203397002222844750c3ebf5e34cd2750f4e", "messageHeadline": "Update simple_multi_G.jl", "author": {"name": "Pietro Monticone", "email": "38562595+pitmonticone@users.noreply.github.com", "user": {"login": "pitmonticone"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "29e4c4f86156daf87f7492c0fe00e6c5407f6380", "messageHeadline": "Update slatissima.md", "author": {"name": "Pietro Monticone", "email": "38562595+pitmonticone@users.noreply.github.com", "user": {"login": "pitmonticone"}}, "additions": 3, "deletions": 3}}, {"node": {"oid": "49bf151b3d0b9752ebbfdde6c813d3d9b36be62d", "messageHeadline": "Update model_implementation.md", "author": {"name": "Pietro Monticone", "email": "38562595+pitmonticone@users.noreply.github.com", "user": {"login": "pitmonticone"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "8dc4c2adea38d2543fb9c01ddd370246b4fcbe93", "messageHeadline": "Update LOBSTER.md", "author": {"name": "Pietro Monticone", "email": "38562595+pitmonticone@users.noreply.github.com", "user": {"login": "pitmonticone"}}, "additions": 4, "deletions": 4}}, {"node": {"oid": "43997a3b9d2526c13749029617cf28dc72209735", "messageHeadline": "Update index.md", "author": {"name": "Pietro Monticone", "email": "38562595+pitmonticone@users.noreply.github.com", "user": {"login": "pitmonticone"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "d2c9d0d8cd120d21662c6b9b7e4b0e1c20cb7c03", "messageHeadline": "Update makie_recipies.jl", "author": {"name": "Pietro Monticone", "email": "38562595+pitmonticone@users.noreply.github.com", "user": {"login": "pitmonticone"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "c0fc3074f8d1ed0e25ec16840d2f53cb0e66ad00", "messageHeadline": "Update OceanBioME.jl", "author": {"name": "Pietro Monticone", "email": "38562595+pitmonticone@users.noreply.github.com", "user": {"login": "pitmonticone"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "e2ee1c90c28d22c1213444b196b5df72d47182c5", "messageHeadline": "Update README.md", "author": {"name": "Pietro Monticone", "email": "38562595+pitmonticone@users.noreply.github.com", "user": {"login": "pitmonticone"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "d5c79f11e09c9f9e047ff1dc658190427c9b58a8", "messageHeadline": "fixed `Biogeochemistry` show", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "b7500808078c00da6c04f6ed6193c0620ea6eda9", "messageHeadline": "fixed bgc model shows", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 8, "deletions": 8}}, {"node": {"oid": "37530fcc869919f8174db73bc7a1d41f4176f7de", "messageHeadline": "Merge pull request #154 from OceanBioME/ncc/fix-typo", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "37b83e102eb5cf56b38b9100258aceadc4779cbd", "messageHeadline": "fix author name typo", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "39a32a870f44a4dd678975d674d66a68875f7d43", "messageHeadline": "Fix author name typo", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "bb4049bc7d6a255e5c91468671920e16b8c9ae6a", "messageHeadline": "Update README.md", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 3, "deletions": 1}}, {"node": {"oid": "b68650db0ea2ebd6a4a88c329bbfa5a04759caf6", "messageHeadline": "Added zenode link to readme", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 3}}, {"node": {"oid": "1c877b4c0a2a8b941d28c74e2cac76551ba13a1b", "messageHeadline": "Merge pull request #153 from OceanBioME/jsw/fix-compats", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "6aa06eabb92a0d2ba2bf0e1b9422008e80e6cec1", "messageHeadline": "added oceananigans compat back", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "dc3b4aaa7e98fc229dfb232d157fb175be157fad", "messageHeadline": "Merge pull request #149 from OceanBioME/jsw/streamline-gasexchange", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 93, "deletions": 125}}, {"node": {"oid": "49e5e99e90728a7ba9b1cdb4b73a6597cc19bfba", "messageHeadline": "Oops", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 0}}, {"node": {"oid": "27a04e6c6d9768e9635bdfd6176698c16a63f558", "messageHeadline": "Apply suggestions from code review", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 5}}, {"node": {"oid": "cbfa9ae6f6ca8b8acf72bd3c7509f9c9c270017d", "messageHeadline": "Merge branch 'main' into jsw/streamline-gasexchange", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "c04377b930d1579337211b3bd06222343fef535e", "messageHeadline": "fixed gas exchange docs again", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 1}}, {"node": {"oid": "cdb79a3236461e5c32a916639b10dc8da997eae1", "messageHeadline": "Merge pull request #150 from OceanBioME/johnryantaylor-added_acknowle\u2026", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "1a9b1b07d4fa2fe398d24823b8398f734ee3ccf2", "messageHeadline": "fixed gas exchange docs", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 10}}, {"node": {"oid": "b897cb2c039292e8fb83429b4a0ee54c2754e870", "messageHeadline": "hopefully fixed docs", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "8aad0704aa265d18b4d25ba08f3173c7989d548c", "messageHeadline": "fixed example", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "c33937d28629b6fe4423918a72a6922144613638", "messageHeadline": "fix kelp test", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 4, "deletions": 5}}, {"node": {"oid": "f5b37d39a82e4f6d5b257467441118f2e35f1acc", "messageHeadline": "updated both oceananigans compats", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 4, "deletions": 5}}, {"node": {"oid": "1219dac21ba3db9861c20ae79d9f832b271fca09", "messageHeadline": "up Oceananigans to v0.89.2", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 2, "deletions": 6}}, {"node": {"oid": "a7227d63dc1cad9589e9117811852fae09a5d034", "messageHeadline": "Merge branch 'main' into jsw/streamline-gasexchange", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 158, "deletions": 144}}, {"node": {"oid": "73434442b283dcc6f2d6b1929a287dc079c8112e", "messageHeadline": "Update paper.md", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "0726da153f26dfb42f3140958cf47126702dae37", "messageHeadline": "Merge pull request #146 from OceanBioME/ncc/update-deps", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 159, "deletions": 145}}, {"node": {"oid": "4d34ff4f960e1412ac52a4dd26d5af7e17f27aeb", "messageHeadline": "removed background addition for now", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 4, "deletions": 7}}, {"node": {"oid": "6fe8673ceca63b772ce7e2345b8f0a1285b276e8", "messageHeadline": "correctly interpolated fields into kelp model", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 8, "deletions": 4}}, {"node": {"oid": "5bb7494c568826ef099dde5a0f44f75eccb4bccc", "messageHeadline": "fixed eady example by changing to T and S dependant buoyancy model", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 16, "deletions": 11}}, {"node": {"oid": "14df6fa0b73599db3ffd0d29ababd1f155630a2f", "messageHeadline": "finished off data forced and kelp examples", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "f955d18c1a1ad8e4ffc4e88a755369f86fbdfd64", "messageHeadline": "oopsie", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "61907e92e5beca7de3f8a9cc3e331ad61851c9e6", "messageHeadline": "this is breaks the gas exchange and kelp APIs", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 7, "deletions": 2}}, {"node": {"oid": "b54c1fbed9b876f55651a3081e216a87f51827dd", "messageHeadline": "fixed kelp todo the same", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 29, "deletions": 36}}, {"node": {"oid": "04c3f58f214ef5df2884a6586e9b5a2a85217c68", "messageHeadline": "fixed one of the examples but relies on Oceananigans PR #3323", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 13, "deletions": 6}}, {"node": {"oid": "3fa303ddf95e937798581ed2a37e1d9a819cae9e", "messageHeadline": "delete PISCES.md", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 0, "deletions": 14}}, {"node": {"oid": "da6ca96b8ad1c615308318408c8aab9254434226", "messageHeadline": "clean up gas exchange and drop support for function T and S", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 13, "deletions": 41}}, {"node": {"oid": "b5dc83fa6644239416446044f8adb593afef360c", "messageHeadline": "try remove `warnonly`", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 0, "deletions": 1}}, {"node": {"oid": "fb16867bc696dce0a0ee6084a50c1272d2478d18", "messageHeadline": "pin to Oceananigans v0.87", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 5, "deletions": 5}}, {"node": {"oid": "9e623cb4e8ac378c7fa1979c580226007c0a02b7", "messageHeadline": "code cleanup", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 5, "deletions": 3}}, {"node": {"oid": "91e3db504aa90bd14770c11bb1e822bb2c55332d", "messageHeadline": "use present", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 3, "deletions": 4}}, {"node": {"oid": "039ffc6f8be07926db272adca99192c433edf50a", "messageHeadline": "point to julia docs for import vs using", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "92cb3a499b79aec896d382e30c2059e49791dc49", "messageHeadline": "better latex rendering for eqs+fix typo", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 17, "deletions": 25}}, {"node": {"oid": "25e4e5c139175c182495c569607b2744757e88ab", "messageHeadline": "issues -> issue", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "d61189bdec70a2255e3440fc87ab8025b68f6aa5", "messageHeadline": "some uncluttering of eqs", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 17, "deletions": 1}}, {"node": {"oid": "8c3158dc094fce32013fd923c1df89ab77535d85", "messageHeadline": "bit rephrasing", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 4, "deletions": 4}}, {"node": {"oid": "368610c104ccfb0a023a0f1ee5299c5814a73b08", "messageHeadline": "remove unnecessary import", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 3, "deletions": 2}}, {"node": {"oid": "b75bb081720468dea82165277d09033fc34186ae", "messageHeadline": "fix doc crossrefs", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "aa550ea85340f2726e8dd51f8dd874765d9ca1f2", "messageHeadline": "some rephrase; use present rather than future for more directness", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 24, "deletions": 19}}, {"node": {"oid": "42bf99185be45a2bfd8c7985caad38ae96804260", "messageHeadline": "update git remote instruction", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "9dc4a0258ec8c445e980c41e487e9cc99f2fe717", "messageHeadline": "add missing doi", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 0}}, {"node": {"oid": "8f5e155077a5013f1c5ad89ec8bbba11a8d37231", "messageHeadline": "add missing doi", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 0}}, {"node": {"oid": "75567d32e940b4c964b8163a03de6eae571bd555", "messageHeadline": "remove extra quote", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "0e14e4daee3d8dd42f2795108ee91ff4d37384ae", "messageHeadline": "add missing quote", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "662db634494f1e4bb0124237a1f97defce01664f", "messageHeadline": "add contributors in authors; clean code", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 11, "deletions": 13}}, {"node": {"oid": "92d84c676648843ca07364b221fceaac243c7ebd", "messageHeadline": "don't error for cross_references", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 0}}, {"node": {"oid": "b2fa2c24f31e9caf0cba1140d8d0f1f652e98f21", "messageHeadline": "bump patch release", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "f4176c84a50577f64afd1ec5c827c5de64870d85", "messageHeadline": "update bib syntax", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 2, "deletions": 1}}, {"node": {"oid": "f5a12808a63ac8fb9a86946225edd969bbe0c7c4", "messageHeadline": "merge main", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 3506, "deletions": 478}}, {"node": {"oid": "b413571633a1df49f48def5b54a29101d47d8665", "messageHeadline": "Merge pull request #148 from OceanBioME/ncc/readme", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 35, "deletions": 3}}, {"node": {"oid": "2184ca3054a8137b8987c848e7224a693bcd40de", "messageHeadline": "bit of rephrasing", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "5f2950eae2a7fc5da0e1e24785758c766b9ab5e2", "messageHeadline": "add JOSS citation in Docs", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 16, "deletions": 3}}, {"node": {"oid": "d4fe04ad3d472d0e3b8d26092500d7f4ae0165f7", "messageHeadline": "Add citation section", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 19, "deletions": 0}}, {"node": {"oid": "83e11aadd94701013c9af50ac583135ef264441a", "messageHeadline": "Merge pull request #76 from OceanBioME/joss-paper", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2925, "deletions": 2}}, {"node": {"oid": "7e92e748b680c56baac38bfeb016b6551f617624", "messageHeadline": "add JOSS paper doi badge", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "00c1d689060e49dbb29c0525fe572b1675163c23", "messageHeadline": "Merge branch 'joss-paper' of github.com:OceanBioME/OceanBioME.jl into\u2026", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "28aefbe9fab1f746c6e67c98f93acba4c1ac00c9", "messageHeadline": "add citation.cff", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 62, "deletions": 0}}, {"node": {"oid": "d318121bc3e67d01b9174cd994f332d17e996402", "messageHeadline": "Inconsistency in escaping of package name", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "59a581e3e073244ba0437d2da88846bf6295379b", "messageHeadline": "remove duplicate Documenter compat entry", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 0, "deletions": 1}}, {"node": {"oid": "21124b26735ae22a424352277089f6266d409698", "messageHeadline": "Merge branch 'main' into joss-paper", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 506, "deletions": 435}}, {"node": {"oid": "2ad2f3bf75a79541802d7487473bc6a7f875e65a", "messageHeadline": "pin Documenter to v0.27", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 0}}, {"node": {"oid": "4cf6565567aa40d91b7522d611e196575fb9c187", "messageHeadline": "Merge pull request #138 from OceanBioME/jsw/gpu-sediment-bug", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 506, "deletions": 435}}, {"node": {"oid": "6a5d8f88b607f5e86d5070f2dc231082432926cc", "messageHeadline": "Add orcid", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 0}}, {"node": {"oid": "103c9561b785d02356f0441e5393b8e618a025e4", "messageHeadline": "removed accidentally committed new files", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 0, "deletions": 169}}, {"node": {"oid": "99f19061de5f8d7117a6fdc831e25d97ff4ab399", "messageHeadline": "add orcid", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 0}}, {"node": {"oid": "b1824888d7be48ab0a269751c4a8e7cf5ad8351b", "messageHeadline": "Remove draft workflow", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 0, "deletions": 23}}, {"node": {"oid": "58befcaecea226cf07dced3423373e534eefd7d3", "messageHeadline": "Added reviewer acknowledgements", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "e4258c1b0fb3c7b2acfb534c46d8dc8c034b90a8", "messageHeadline": "Update paper.md", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "be6b62ab941125ba56d61180b231e8a8e837f929", "messageHeadline": "Correction", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "59294144f482f19004acb3b5aacb403bdf4d8aa6", "messageHeadline": "dimension correction", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "ed69acf93cc1f0bdb9c61f9bcbc043db3c0c4aaf", "messageHeadline": "updated figure", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "a8bed1ede046fd580438c02c4432ec37435fd26a", "messageHeadline": "updated eady figure", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 0, "deletions": 0}}, {"node": {"oid": "745501e43beb69bd347ef3f9229465c272a5f81a", "messageHeadline": "bump oceananigans compat entry", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 4, "deletions": 4}}, {"node": {"oid": "67536a9c8dd1248f7ff042c3623becb37baf3e81", "messageHeadline": "trying to not modify the sediment model", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 74, "deletions": 56}}, {"node": {"oid": "455e885b2a1ccc06469416b1101f81f390cdce1f", "messageHeadline": "didn't push latest figure", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 0, "deletions": 0}}, {"node": {"oid": "6d7a468c5990aea5a6a95c284b088474400f666f", "messageHeadline": "Merge branch 'main' into joss-paper", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2236, "deletions": 859}}, {"node": {"oid": "210951b3f9f1a113227fb6e86254fa485320eb68", "messageHeadline": "Apply suggestion from code review", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "79a58aaae48c573178ace6fddad62c3d0b12e1dd", "messageHeadline": "Apply suggestions from code review", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "591d3d2d97b5e91cda9402425f30b52ad1f7820f", "messageHeadline": "Merge pull request #145 from OceanBioME/jsw/joss-eady-fig", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 448, "deletions": 126}}, {"node": {"oid": "0349288d3d07db43c61980327b9a934486c1752d", "messageHeadline": "changed colorrange again", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "93e655db615ced472a1e1cdba93845b7caad0ff8", "messageHeadline": "updated eady plot file", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "edf470a78b1d882561f016490334379174175ec7", "messageHeadline": "changed colorrange", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 0, "deletions": 0}}, {"node": {"oid": "d12ee7cb860fbedb493f8501d1f7ee6c66a79451", "messageHeadline": "Merge branch 'joss-paper' into jsw/joss-eady-fig", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "675d256f5edc5d524a73b43109c80108040593fa", "messageHeadline": "included Julia GPU in acknowledgements", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "a7fc9e01c6225896fe58edb482ced6564a7e4919", "messageHeadline": "modified figire", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 13, "deletions": 6}}, {"node": {"oid": "c3506d25791289c11a15e3e6f92f52b0b37e2f69", "messageHeadline": "Update src/Boundaries/Sediments/simple_multi_G.jl", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "69eb8226b72eff0b3dd91f93a39736be1ff52f34", "messageHeadline": "Apply suggestions from code review", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "1257d280ef6d34d76d3f280c61ef0442614f5a6c", "messageHeadline": "corrected citation", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "526efababadaa38509dd7d3eb415295d55871c44", "messageHeadline": "added citation for KA and CUDA", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 21, "deletions": 3}}, {"node": {"oid": "8a70f463344a3d629440563523c050328b27a01b", "messageHeadline": "added sentence about color ordering", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 1}}, {"node": {"oid": "a566ab15053f3fd671c8c16191514f71297aff84", "messageHeadline": "updated eady figure", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 187, "deletions": 25}}, {"node": {"oid": "cd992995b7d585d034a4d54cc925cff2eaa13e4a", "messageHeadline": "generalised sinking tracers for NPZD", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "6b7b3fb50c73e63f020fcef5cf48b1781bb578bf", "messageHeadline": "Remove redundant fallbacks", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 0, "deletions": 4}}, {"node": {"oid": "3ddd9470159d197b7a4b81dd4737fe9e5c0fe9c3", "messageHeadline": "typo", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "2dfb211aa9b6287df50f33ca6c0c37305e0b4775", "messageHeadline": "updated model implementation page", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 3, "deletions": 1}}, {"node": {"oid": "3b953dd63ed5ed2cdfa149cf0131c68e68aab1f6", "messageHeadline": "minor issue with instant remin", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "aecd5b716afc8b4296475442cc0a05b2da9cfec2", "messageHeadline": "minor issue with instant remin", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "13314f060b9ce011e4667d6851aac76c6d29a3a7", "messageHeadline": "tidy up", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 1}}, {"node": {"oid": "70cb036602e9927f02258512ac75a79ba9a75743", "messageHeadline": "typo", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "36d274163b44eaa0397325ffac8b604375eaf068", "messageHeadline": "another mistake", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 8, "deletions": 8}}, {"node": {"oid": "e9f9206afb1fe87187d8d00d663a6c24e59fb753", "messageHeadline": "typo", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "9ccda063622c87a6b4a91e73b7bdcc79ad37d093", "messageHeadline": "reduced complexity of sediment models further", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 22, "deletions": 1}}, {"node": {"oid": "bc6bb3ea38c8e02eb4c7286e43f3b5f169f413d6", "messageHeadline": "flattened sinking velocities", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 17, "deletions": 26}}, {"node": {"oid": "2cdee7bd4465ddff66bf5c76d9b664fbdb35b4ed", "messageHeadline": "removed unneccesary `Array(interior(...))`", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 26, "deletions": 24}}, {"node": {"oid": "b8e1af38c0e3205639c4f21356dc28534d644f6d", "messageHeadline": "fixed sediment docs", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "2351d64d4661814b4ad57156c8f40ee6ff894af8", "messageHeadline": "sign error", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "d3f08828adefb5ad95e1b29b55b894c3a1c5a801", "messageHeadline": "typo", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "21622ff4f232f89721bdecbbcbf3fc0007a78eb5", "messageHeadline": "updated broken tests", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 0, "deletions": 8}}, {"node": {"oid": "b9b42b3174c139ab1bb48cc2e1d0e567efc4ee00", "messageHeadline": "improved generality of `adapt_structure` methods", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 110, "deletions": 107}}, {"node": {"oid": "28559362ac039b6c32ab7863d51abde294a01813", "messageHeadline": "changed params from named tuple to tuple", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 40, "deletions": 54}}, {"node": {"oid": "6c879301658b7d893deda4b63e3d456be6b134a5", "messageHeadline": "changed params from named tuple to tuple", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 120, "deletions": 116}}, {"node": {"oid": "474647d74674c7314af2721e5118b9e810c1d9b7", "messageHeadline": "error in kelp advection", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 3, "deletions": 2}}, {"node": {"oid": "d6279190b0bef1afdd18ae2a6cf89f1b274ac31a", "messageHeadline": "update deps", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 5, "deletions": 4}}, {"node": {"oid": "6327e084ef9c64795bbc76fd50aa980f492e5107", "messageHeadline": "drop strict=true kwarg", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 0, "deletions": 1}}, {"node": {"oid": "497efe03999c5fbfcecbb975cdaca1cdd84ed97d", "messageHeadline": "update dependencies", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 34, "deletions": 24}}, {"node": {"oid": "140781657b347d8d6cd6ffa490450ce39d4b5021", "messageHeadline": "Update Manifest.toml", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "5abb4217ab984f2cd32f2bee8742201c68f7e59b", "messageHeadline": "renamed lobster variable redfield", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 14, "deletions": 14}}, {"node": {"oid": "ba39a35d1fb83b3d0a6eff57d46c310d4632cf4c", "messageHeadline": "hopefully reduced sediment kernel parameter size", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 181, "deletions": 3}}, {"node": {"oid": "0cb434ee21abcb58902fdde4ae6b9b2865043f98", "messageHeadline": "typo", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "f4d17ed998b29a2d254ed3fb55e66fbd55b26975", "messageHeadline": "fix box model 2", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 3, "deletions": 1}}, {"node": {"oid": "16094c9185332aabc65ca9d91e19e7da9edf9eff", "messageHeadline": "fix box model", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "37a21c1e6930c13686e8ce0b8cbde643082f6584", "messageHeadline": "corrected run criteria on GPU", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "b133ef0f4741377bcfbf44aa99e3fce2172babcd", "messageHeadline": "corrected run criteria on GPU", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 0}}, {"node": {"oid": "042250808a3e8f2bda38bf104a0f36d4f1d25f2d", "messageHeadline": "oops", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 5, "deletions": 5}}, {"node": {"oid": "2187c9cdc486adca3c797488a27f3cae0c1a7e2f", "messageHeadline": "missed one", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 6, "deletions": 4}}, {"node": {"oid": "181aa5efe58b380b059b30deaafd8f6089e801e6", "messageHeadline": "fixed sediment test and data forced example", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 12, "deletions": 3}}, {"node": {"oid": "98e47e6e36eb9a4beae10b273819d79529d821c5", "messageHeadline": "remove column diffusion timescale references", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 19, "deletions": 31}}, {"node": {"oid": "3339990522ad04a89bd6c0e297bd16122d08465e", "messageHeadline": "half changing the sediment adapts made it not work for CPU", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 12, "deletions": 12}}, {"node": {"oid": "ebea1e06abe1504930a41d18370340951ad19aa3", "messageHeadline": "lat/lon test still not working properly", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 13, "deletions": 10}}, {"node": {"oid": "f5d6f4a6e539692f77832df31d8ba9d2aa57b7b6", "messageHeadline": "fix LOBSTER sediment test", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 10, "deletions": 1}}, {"node": {"oid": "31cb1b7de162a1e5e750c92ba17ca542c91c5ab9", "messageHeadline": "use simpler LOBSTER model with Multi G to fit parameter space", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "61e10f40d8a1c87b9d52047285aa8d647696200b", "messageHeadline": "missed an allow scalar", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "41188736162c0d069d5bff82ba6792e91040d96b", "messageHeadline": "removed broken flag for multi g test", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 0, "deletions": 7}}, {"node": {"oid": "f10ff1084ab92f45fd86e92490103853016426e9", "messageHeadline": "fixed docs compats", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 0}}, {"node": {"oid": "fb35422a548578f66c956886d010a8e7d6515e1d", "messageHeadline": "missed an allow scalar", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "19a40f189b95bad505da500ebf4fb2697a61fdb1", "messageHeadline": "removed column diffusion stuff", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 35}}, {"node": {"oid": "215e0a2712c63e2f75f66521780b0aa29fba6864", "messageHeadline": "removed errors from kernels", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 5}}, {"node": {"oid": "30cdfba55bf60dce235a7794996b4d00a6609a06", "messageHeadline": "tried to simplify multi G adapted to GPU", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 7, "deletions": 7}}, {"node": {"oid": "8f133dfe5301e9241eddb3a5e5a74b0c0559142e", "messageHeadline": "add method for box model grid", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 3, "deletions": 1}}, {"node": {"oid": "54404a993447730c526bae6242f727d14437fbde", "messageHeadline": "Documenter 1.0 just dropped and it breaks a lot of stuff that I will \u2026", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 0}}, {"node": {"oid": "ec474eab5f7e0d0d2a94d16c545bd8cff106b72c", "messageHeadline": "rtols were incorrect", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 3, "deletions": 3}}, {"node": {"oid": "ac933755074af1e8ec8c8e05b0da528db5d55988", "messageHeadline": "added eady script and changed resolution in text", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 132, "deletions": 2}}, {"node": {"oid": "df04f8e110635e44bf2433e40bcb0ec7a72e3190", "messageHeadline": "bump minor version", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "cf328849c722a25c8c4dc63ac04864569264dfda", "messageHeadline": "marked multi G on GPU as broken", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 8, "deletions": 0}}, {"node": {"oid": "cfb2175a6ee216a9d35ec44c3f76b4a116c7c4bb", "messageHeadline": "multi g sediment will now compile but parameter space too big", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 0, "deletions": 1}}, {"node": {"oid": "a7ce62fba8be196b28f20d9f83ebf1d07c5205fb", "messageHeadline": "spotted the bug finally", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 7, "deletions": 7}}, {"node": {"oid": "97253fd2d3f0f49a3848a0b665910659e890d9a7", "messageHeadline": "some sediment bugs", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 13, "deletions": 14}}, {"node": {"oid": "f107df0a9fd4aac7a66597db5e74d0ad19f90b46", "messageHeadline": "immersed boundaries fix for multi g", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 19, "deletions": 21}}, {"node": {"oid": "02eb7b56f9500fd4684da7a637bd8900dc7db4c6", "messageHeadline": "another multi g fix", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 33, "deletions": 37}}, {"node": {"oid": "185e7b1d947986241a7cd372f6dea40188827534", "messageHeadline": "sediment adapt fix", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 19, "deletions": 0}}, {"node": {"oid": "3a95540ed336c3c831a6aee144fda16f1f6e5231", "messageHeadline": "sediment test feedback fix", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "d2e8cc29a009649ecc718da27a47146aa346827e", "messageHeadline": "sediment test fix", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "90d2ddeb8b81decff2ba027c5fde2ce172c70211", "messageHeadline": "this shouldn't have worked anywhere before", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "043a2bebddffa4d7c5fb22138b4d9c310a785179", "messageHeadline": "attempt to fix sediment tests", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 7, "deletions": 6}}, {"node": {"oid": "d3485cc257104d51293a78ffd2e6910699b7feed", "messageHeadline": "arch array for sediments", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 4, "deletions": 3}}, {"node": {"oid": "9f93ebe8724375e2348ac38d21b5c887a48b8fe4", "messageHeadline": "corrected kelp test tollerance for GPU", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 6, "deletions": 2}}, {"node": {"oid": "f5ccfd1837b00b77320d0a862bb60d0188feb573", "messageHeadline": "forgot to add arch array", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 0}}, {"node": {"oid": "3ff0ea932706b5b81f3092d1aa8f681e12596f26", "messageHeadline": "typo", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "a72e9c0ae0f0b5488ec7629d61d4bc78c80b5886", "messageHeadline": "added adapt structures for kelp particles", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 5, "deletions": 4}}, {"node": {"oid": "6b550b25ec65225bdf9b94c409d821a3a9d8739c", "messageHeadline": "possibly fixed kelp test", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "b09592f779c8ab574082d8ad6a890d49bceab14e", "messageHeadline": "oops", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "71978f2b96f02434c76f9d26044d2ff53ecc6d8e", "messageHeadline": "dropped support for using fields directly in gas exchange boudnaries", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 8, "deletions": 5}}, {"node": {"oid": "689db1b001dff761e3e21e03eefea1f9dcf3606d", "messageHeadline": "more GPU stuff", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "2d6616376e8658d99515264e9964e4220209b80b", "messageHeadline": "typos", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 3, "deletions": 3}}, {"node": {"oid": "72250523247836e182515cc50980f24fa2310b5c", "messageHeadline": "maybe finally fixed gas exchange", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 9, "deletions": 3}}, {"node": {"oid": "b33a2beb9043f6fb62e823afcb622ea1937fe65e", "messageHeadline": "fixed kelp test", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "0f05b2198105c0764f8468a94c4246007a1dbbb3", "messageHeadline": "fixed kelp test", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "d80cf05046a535347cb9cd7974490fd28355acda", "messageHeadline": "fixed kelp test", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 9, "deletions": 8}}, {"node": {"oid": "c78d917b0065cbd34675ac720302581e08d5876c", "messageHeadline": "oops", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 3, "deletions": 1}}, {"node": {"oid": "19f6e3bf7b4450afe20f429d2d14ad2e3f70fbde", "messageHeadline": "corrected gas exchange test", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "670076a01eedb258d3215e909a71de9eb3aaaffe", "messageHeadline": "gas exhcnage boundary value fix", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 13, "deletions": 2}}, {"node": {"oid": "3d409b8a109da5d0535fa3aff5379e1412e85844", "messageHeadline": "fixed again", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "de5f4d3898d0d39738f6deb5812a2da9198658f0", "messageHeadline": "fix gas exchange test", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "e414c19908936dee46176fd9fba5ab59dd916d60", "messageHeadline": "fixed gas exchange on fields", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 3, "deletions": 6}}, {"node": {"oid": "b32322ee19768e5e8a0aa00fbc802747d1f89a5d", "messageHeadline": "Update paper.md", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "9f6f5c0dfc422f086d7c871e9f168d4c1e3b231c", "messageHeadline": "Merge pull request #141 from OceanBioME/johnryantaylor-JOSS-edits", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 47, "deletions": 36}}, {"node": {"oid": "956734fde5d6d870084f2f0c9ba83720a082f46e", "messageHeadline": "fix gas exchange test", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "8c880c34ffec460baeca9160bb58850ca727d73f", "messageHeadline": "gas exchange test still not running", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 1}}, {"node": {"oid": "49282b317277d120a0fcc24abe587eaba65ab3b3", "messageHeadline": "don't run doctests on GPU", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "e0ceb49331e763567b14ad574b767f35222a13b0", "messageHeadline": "fixed (?) gas exchange test", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 4, "deletions": 2}}, {"node": {"oid": "64fc80efd2eb6891c84fb0eb3144cbb20ec196d9", "messageHeadline": "removed scalar indexing from sediment tests", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 24, "deletions": 9}}, {"node": {"oid": "40f0d28f1d6e1005470bb1269bb3a9c1f4eef1d0", "messageHeadline": "removed scalar indexing from kelp tests", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 26, "deletions": 14}}, {"node": {"oid": "1ff75e54b537d47ce1091961c8df92f06c297547", "messageHeadline": "forgot to remove a show (but also revealed that a test wasn't using GPU", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "058619b67e8505189dc8741d5ef7139b872de707", "messageHeadline": "hunch about memory not being freed", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 3, "deletions": 0}}, {"node": {"oid": "a0d8da43b2396598901e348252f211b36e5a6a12", "messageHeadline": "fixed npzd and losbter tests", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 11, "deletions": 5}}, {"node": {"oid": "f9d3d8c0370f47f6295526ae035e17d57b6126e3", "messageHeadline": "Update paper.md", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "37a03112fe2479e9ec3f1693b5cf273435ddf123", "messageHeadline": "fix typo", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "b658864620fe9aa9ea7388d933b512cca447f120", "messageHeadline": "fixed light test", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "ec50cf5d74687c3fdb61a8859d71cf845c7f4035", "messageHeadline": "ah thats it", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "c090448b8da5d218e77b7612e08839936b036c6d", "messageHeadline": "oops", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "a149f8f99a194f699b42b8647c44f450c2ec6adc", "messageHeadline": "that one works apparently", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "1065f22843b663b59c946bbc40834721cd23a521", "messageHeadline": "not sure why this won't work", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 3, "deletions": 3}}, {"node": {"oid": "0280e20a61cd5f8a40a91d3baf3513a6d7a3a405", "messageHeadline": "fixed citation (?)", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "c5c956934cf7957366cc11fb671b664d5b6cb25b", "messageHeadline": "fixed utils test", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 11, "deletions": 4}}, {"node": {"oid": "9ae44c5d52e7bba995a7bfcaf7bce5fd1112351b", "messageHeadline": "Update paper.bib", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "40c88c3f3dfbe37c3f1c08b19a105178844fc6d0", "messageHeadline": "add doi", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 1}}, {"node": {"oid": "369c5bdd18086cfa47da823d263f04f5120924fd", "messageHeadline": "Update paper.bib", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 10, "deletions": 1}}, {"node": {"oid": "834d18ca94130193c307303efcd6658ad8da480a", "messageHeadline": "oops wrong model", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 5, "deletions": 5}}, {"node": {"oid": "6b40a921fbab3a23ebf3a18e30b2d79add43c18c", "messageHeadline": "kelp please work", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 3, "deletions": 3}}, {"node": {"oid": "5d4944f5f11595989fb3a23e1821a5148678343f", "messageHeadline": "a fix", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "df20a2f920b3833aedc74d3d2ae342c90402d6ea", "messageHeadline": "maybe fixed", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 4}}, {"node": {"oid": "b32f4fd58a7245a8b75bd97ceaf25dc19ced6d2e", "messageHeadline": "particles fix", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "e0d4e7d668d9bf52ce949aee9f15a5b3151e92ee", "messageHeadline": "idea", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 5, "deletions": 7}}, {"node": {"oid": "3c8edb6d6c06ab316139abbb0e0dc4a5fe68c28c", "messageHeadline": "tidying", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "34c157423de4af0a5b2236b1a8a66a48d0e258fb", "messageHeadline": "Update paper/paper.md", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "f59164905c435bdec82b5a1e4f7a02f507a28b69", "messageHeadline": "Update paper/paper.md", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "6343f005c765dc4cfb04bfa31ed9cca187feac4a", "messageHeadline": "Update paper/paper.md", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "1464028a9551d5b0782038276d94c1bac4f75ffd", "messageHeadline": "Update paper.md", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 2, "deletions": 1}}, {"node": {"oid": "038bfaf0eeb76aec868f23d2511e324ab09d4207", "messageHeadline": "Update paper.md", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 34, "deletions": 34}}, {"node": {"oid": "ff0e34311f72fcb74d58fba8f36f6da6ea845727", "messageHeadline": "maybe fixed scaling", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 24, "deletions": 15}}, {"node": {"oid": "16fb5bba03c483835876dec6b332ea021a39ef3f", "messageHeadline": "Updated with review suggestions", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 4, "deletions": 5}}, {"node": {"oid": "67f9365b92a3eb2b883a776f8cc787fe5af2804f", "messageHeadline": "fixed test labelling", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 4, "deletions": 4}}, {"node": {"oid": "ce514c0ae6fdbd29016579df0fc708721cb42ce8", "messageHeadline": "oops", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "125cf0a645d51017a48f697c2ca054dc51f71a2e", "messageHeadline": "added GPU detection to tests", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 45, "deletions": 52}}, {"node": {"oid": "a67c79e0b0572d77b9149903fd0de701855cbe0f", "messageHeadline": "fixed multi g", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 4, "deletions": 4}}, {"node": {"oid": "d9a210aa1a5237c4920b22bb6d97abdc1c9f443c", "messageHeadline": "maybe fixed", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "450b6a96591e9515c3c2c58ae6a21b14c8f3ce3e", "messageHeadline": "Merge remote-tracking branch 'origin' into jsw/gpu-sediment-bug", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 680, "deletions": 635}}, {"node": {"oid": "ac8419a1ce5a06a82be31588583636b212c09598", "messageHeadline": "Merge pull request #134 from OceanBioME/jsw/river-input", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 681, "deletions": 636}}, {"node": {"oid": "29514bf907f38df956d80bb8a518823297f7ca32", "messageHeadline": "maybe fixed sediment again", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "13b040524c6736bc321671d0afe9290caa471da7", "messageHeadline": "maybe fixed sediment", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 7, "deletions": 7}}, {"node": {"oid": "cebc1fac32a9d231610214812db45081234aefea", "messageHeadline": "and again", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 1}}, {"node": {"oid": "20524a9840fddf6bc54013edff47d95eb898c3e9", "messageHeadline": "fixed adapt method for instant remineralisation (oops)", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 5, "deletions": 5}}, {"node": {"oid": "658302791bac9da5600ff040dd6a75e8007e7dfb", "messageHeadline": "fixed gpu incompatability in `calculate_bottom_indices`", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 3, "deletions": 2}}, {"node": {"oid": "8f2b56ec8f2837e136499e4abfd5cf4e24cb3b23", "messageHeadline": "oops", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "a2570ed6df7ae72f9a9389e5126b3b3ba8342b05", "messageHeadline": "Update quick_start.md", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 0, "deletions": 2}}, {"node": {"oid": "0cefee54d41156b1f4b27ba74666403d1df714d9", "messageHeadline": "Update quick_start.md", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 2, "deletions": 0}}, {"node": {"oid": "cdbd356c0ead16dfce353f8dce8458f2b7bf18b6", "messageHeadline": "rephrasing in quick start", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "78093d798570062a69fdc377dd9089a728d0fbda", "messageHeadline": "fixed quick start", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 6, "deletions": 2}}, {"node": {"oid": "ad12a2187c88c1af9a34035c6a26e2e12f9fa504", "messageHeadline": "moved `Pkg.add`s out of `@example` blocks in quick start to see if th\u2026", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "89c55a5db20c72f611117bb7363bbfe2c339eea0", "messageHeadline": "applied review suggesitons", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 0, "deletions": 3}}, {"node": {"oid": "af43c8cd21417a5a0d9c3e9a79ab04faf22fba64", "messageHeadline": "Apply suggestions from code review", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 15, "deletions": 12}}, {"node": {"oid": "9a78a1b3fd7dab53871a1883a812ac9f2963abe7", "messageHeadline": "update dependencies + bump compat for docs/Project", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 24, "deletions": 30}}, {"node": {"oid": "dbc66f263b00c202f7c7bd1c9af128dbbcdcf8c8", "messageHeadline": "Minor corrections", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 4, "deletions": 4}}, {"node": {"oid": "c5cee8a49ad0dd156755c7aa8980f43be1fa3cce", "messageHeadline": "added project with compats to paper example code", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1947, "deletions": 0}}, {"node": {"oid": "bb09f213fb72b647a2825b97bf5c8028e188fc07", "messageHeadline": "fixed a citation", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 16, "deletions": 1}}, {"node": {"oid": "41be828536b5f670a003eaeabffa819c77620223", "messageHeadline": "avoid ; in literated examples", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 6, "deletions": 3}}, {"node": {"oid": "3f6f2c37cea2e89906c379e3d06fa8e7c782729c", "messageHeadline": "bit code cleanup", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 13, "deletions": 13}}, {"node": {"oid": "a9dac4b6e0f467328fc977a5e9aff307d640df00", "messageHeadline": "updated model implementation page", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 3, "deletions": 2}}, {"node": {"oid": "0191dc103d23f8ed96cdb98fc1e0b8baf4995ae5", "messageHeadline": "dropped `UnderlyingBiogeochemistry` in favor of better using the Ocea\u2026", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 13, "deletions": 11}}, {"node": {"oid": "a5fc7e2cd39e9371f7fc0861ff061893af30df4f", "messageHeadline": "fixed julia version downgrade", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 4, "deletions": 5}}, {"node": {"oid": "577f05c8691a1149c2b74bf6ce79ed1d5f052c8c", "messageHeadline": "Bump minor version", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "87c7ae4a039c1c7bc7d81891693b80f461dc84b6", "messageHeadline": "Update index.md", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "ba0d49f3dda8b8c711f471d4c18bfc30621c0202", "messageHeadline": "Updated bgc docs page", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 5, "deletions": 1}}, {"node": {"oid": "f58b7f9cd2faba50024442c961ef6aaaea740438", "messageHeadline": "fixed LOBSTER test", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 29, "deletions": 17}}, {"node": {"oid": "8cbfe2e60b61e20dd0c18f9d5521e5cd9b33014b", "messageHeadline": "oops", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "0deb0a149eba4fccfc0685d96db65588e67d6a93", "messageHeadline": "simplified LOBSTER tests", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 18, "deletions": 36}}, {"node": {"oid": "3a71aaf5dd8b8106ec917c0937774c1d9a66e31b", "messageHeadline": "hide output after loading exampel resoltes", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 5, "deletions": 5}}, {"node": {"oid": "6e37c82abbd07c23b291029a52091dca89752e10", "messageHeadline": "Update negative_tracers.jl", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "1a2b8232861644d14b87158cf4e13b8e9b766a40", "messageHeadline": "attempted to fix docs", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 12, "deletions": 17}}, {"node": {"oid": "c0ac3c16632614ecb4530bde86c3fb3d15d96028", "messageHeadline": "updated examples", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 21, "deletions": 19}}, {"node": {"oid": "ca4cf2e87aa943ded6f7f2547df42f94a72a3778", "messageHeadline": "updated negative protection tests", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 11, "deletions": 24}}, {"node": {"oid": "1f6a4c11166b4e3cdaef1b6c5ebeac349938bcd0", "messageHeadline": "added method to automatically setup negative tracer scalking", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 49, "deletions": 7}}, {"node": {"oid": "7e0b694d1d3fa802388422a58c9ee23f6159fce4", "messageHeadline": "updated zero negative tracers to be more reliable", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 40, "deletions": 102}}, {"node": {"oid": "eb90278ffacd1f02295250e2cd5db96bf6db2962", "messageHeadline": "finished 'modifier' framework", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 23, "deletions": 17}}, {"node": {"oid": "4b7593a2758339873066847e81f07a0ff100a1a8", "messageHeadline": "fixed implimentation docs", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 6, "deletions": 6}}, {"node": {"oid": "ea4926855b5e6b95e68b0e68aaa874c91af312b3", "messageHeadline": "Update model_implementation.md", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 5, "deletions": 3}}, {"node": {"oid": "6a1110aa15daad981e07559acc75aaa747e991bf", "messageHeadline": "Update test_sediments.jl", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "5db1ac2bb3bbdb9bafd577c0e1857acf50722d9d", "messageHeadline": "fixed missed merge conflicts", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 7, "deletions": 21}}, {"node": {"oid": "47610ede2a1613c637bd2cf235862d59359fbc80", "messageHeadline": "attempt to update model implimentation page", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 4, "deletions": 15}}, {"node": {"oid": "565bae8c49d90ea7fe780da6ca64a7d9753dd47e", "messageHeadline": "Merge remote-tracking branch 'origin' into jsw/river-input", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 208, "deletions": 88}}, {"node": {"oid": "ed7ec5006dc097efc81bc3ed75779f6bae3307da", "messageHeadline": "Merge pull request #127 from OceanBioME/jsw/sediment_with_bathymetry", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 172, "deletions": 80}}, {"node": {"oid": "3a352ad181886d0c9863e5789404a366801b6871", "messageHeadline": "Merge branch 'main' into jsw/sediment_with_bathymetry", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 10, "deletions": 1}}, {"node": {"oid": "7f064242da8734b99031eaa3b2977fa64009fe37", "messageHeadline": "fixed docstrings", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 10, "deletions": 10}}, {"node": {"oid": "ef69e24aed98a9a7323fbe18c08f08ee30533394", "messageHeadline": "Merge pull request #136 from OceanBioME/johnryantaylor-patch-1", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 10, "deletions": 1}}, {"node": {"oid": "172192335f682ca665f6533f39e754cb7ae36c56", "messageHeadline": "fixed show stuff", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 9, "deletions": 13}}, {"node": {"oid": "1f87d4d7191029098617da3cc2b25117551c5164", "messageHeadline": "Update eady.jl", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "63d062ba0d632558d53d8f3d500e6ac580046c2c", "messageHeadline": "fixed NPZD redfield", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "6f89d730592a1210b829355f429f04bb77f83569", "messageHeadline": "Update examples/eady.jl", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 10, "deletions": 1}}, {"node": {"oid": "660f6a7c7bb505256770c3aff169d20a1bab9a5e", "messageHeadline": "again", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "991d480f5d85bbd99fc398e53ee6deb339051206", "messageHeadline": "fixed NPZD cabon flux", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "aa6d815893a55df0448df19cfc59413501425b75", "messageHeadline": "oops again", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 0, "deletions": 1}}, {"node": {"oid": "64529fe1fb5230fc834bc753aeadafb1613293b5", "messageHeadline": "oops", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 2}}, {"node": {"oid": "3479ba85526e1aa5fac54992ea345a940d0866c9", "messageHeadline": "fixed rk3", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "b10a4ec68907bfb6f1f1e0bf6bc0556d1c169762", "messageHeadline": "fixed (and locally tested) sediment", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 10, "deletions": 7}}, {"node": {"oid": "53ff3b3e91ae1f43bd1f1e14610fd86a76d2d297", "messageHeadline": "Update eady.jl", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "080488bbdffbf466b9cd81b2f534467ffa5fc279", "messageHeadline": "doctest fix", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 4, "deletions": 3}}, {"node": {"oid": "5dd1832f69e8409657c04919d1997cc3d37bd68d", "messageHeadline": "fixed sediment tests again again", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "b6530fd7cfc5c077738178f8e78a7671954204cd", "messageHeadline": "not sure why column example is being more unstable now", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "1b5693bc349c1e2db2ffe815262a03d83109e14c", "messageHeadline": "fix sediment tests (again)", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 6, "deletions": 6}}, {"node": {"oid": "9ea977e0afa1bf385029cec5f1f9aa6d3f6542e5", "messageHeadline": "fix sediment tests", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "b688c68b69f43d81b6accb1b401b3b201cdee98c", "messageHeadline": "oops hadn't fixed column example", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 3, "deletions": 1}}, {"node": {"oid": "53881f5f4a254ea3ed5216833ee2716dde9243b8", "messageHeadline": "Update test_sediments.jl", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 10}}, {"node": {"oid": "285c82b213a1ac279975fea75278e88a98b57d9f", "messageHeadline": "fixed kelp example", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 0}}, {"node": {"oid": "8d2914b03aae7966318c629830104c134958b7ec", "messageHeadline": "fixed kelp test", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "b7b1c76db7533068955969471032a79d51917d31", "messageHeadline": "Merge branch 'main' into jsw/sediment_with_bathymetry", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 18, "deletions": 14}}, {"node": {"oid": "21fb27cb912591484ce90a56cad930f0dd6e0ae7", "messageHeadline": "Merge pull request #133 from OceanBioME/jrt-readme-edits", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 18, "deletions": 14}}, {"node": {"oid": "749d35902fdb6e363e58a43ac93426e27474d7b1", "messageHeadline": "bumped compats", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 90, "deletions": 73}}, {"node": {"oid": "def4adf99bf58322df45f5b52a9b2fb4f16395ff", "messageHeadline": "fixed examples (again)", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 6, "deletions": 4}}, {"node": {"oid": "e0c93f1f5950b4994a8306834eae82e6d88a6bb8", "messageHeadline": "Fixed example", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "b88d638113db06353518a0ba6873f1d19a861cec", "messageHeadline": "Fixed other LOBSTER test function (oops)", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 3, "deletions": 3}}, {"node": {"oid": "0b2def66f6ed511b9069177aeef494b441805992", "messageHeadline": "fixed doctests (hopefully again)", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 20, "deletions": 14}}, {"node": {"oid": "da3307791a8785158071d33d89f2f2c3f2168d40", "messageHeadline": "fixed stuff and added show/summary", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 9, "deletions": 1}}, {"node": {"oid": "a15377a2692eecb614e05190e246556ffb5298de", "messageHeadline": "added some docstrings and moved `underlying_model` to arg (rather tha\u2026", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 33, "deletions": 16}}, {"node": {"oid": "daa7e9e5b0d9110700a6c9d0e4a13b12bf58f7ed", "messageHeadline": "fixed column example", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "d8cb2059146c5e976205aea4280f1be670117497", "messageHeadline": "fix LOBSTER test", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 5, "deletions": 5}}, {"node": {"oid": "cb01e55c720a1371f953107ce44b33118d6fd6da", "messageHeadline": "updated examples to use redfield function", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 3, "deletions": 7}}, {"node": {"oid": "5d7d0193cc5becc6b19db87a5c9a9db3dc9fa58f", "messageHeadline": "added redfield function", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 38, "deletions": 4}}, {"node": {"oid": "c19bb631df2a41fbc02834e3880a686e87c17a08", "messageHeadline": "fixed examples", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 11, "deletions": 7}}, {"node": {"oid": "c4999288a0c32b8497f2d4397b8837949c3ce9b8", "messageHeadline": "fixed LOBSTER adapt", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 4}}, {"node": {"oid": "f8feb4e120c16935a53bcbe21250bfd5c25a0c03", "messageHeadline": "fixed test lobster", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 5, "deletions": 5}}, {"node": {"oid": "9a8fc8e54ef8d8614969261ecffa485b0e28c170", "messageHeadline": "updated light attenuation test", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "cb6cdfaf822427ba7972d2a1a2bf784c37fcc586", "messageHeadline": "updated light attenuation test", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "d8c520020552f464f8808cab7fbbc07ad3c231a8", "messageHeadline": "fixed LOBSTER", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 0}}, {"node": {"oid": "f353bcc526b55c0222bba7fa618e093b0fc7de5c", "messageHeadline": "didn't mean to include that", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 0, "deletions": 0}}, {"node": {"oid": "b4d7e9c65379fedcefc1b7b7af9b67ef337a3a62", "messageHeadline": "fixed", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 8, "deletions": 4}}, {"node": {"oid": "158936c7f5429695b6ab6439d326f6bb6f1f4cb0", "messageHeadline": "refactored models to abstract out light attenuation/sediments/particl\u2026", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 231, "deletions": 240}}, {"node": {"oid": "8e5e1ef785134f1a0378c07db2ffc0f87ccae4dd", "messageHeadline": "we still have to have the full depth sediment field to be able to out\u2026", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 6, "deletions": 6}}, {"node": {"oid": "f91aaffc2e3fbdfb19495b0c55508f54646e777a", "messageHeadline": "fixed tests", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 5, "deletions": 5}}, {"node": {"oid": "d1a5478c5719169a3b293712c18bd7e2c3ef447d", "messageHeadline": "bump minor version", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "cab6e36befc8b5c4e31573e7e68a82bd0d94858a", "messageHeadline": "Apply suggestions from code review", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 6, "deletions": 6}}, {"node": {"oid": "e8137fb206a8349be84fd9aa1d3ed8a3e6d46ef7", "messageHeadline": "Update model_implementation.md", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 18, "deletions": 14}}, {"node": {"oid": "ecad23aed801c956f5e7ea9a4bad4769ae56b138", "messageHeadline": "updated docs example", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 3, "deletions": 3}}, {"node": {"oid": "b49015f7f662cbe2d95ae0a923be7954fa07f912", "messageHeadline": "Merge branch 'main' into jsw/sediment_with_bathymetry", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 349, "deletions": 12}}, {"node": {"oid": "d5a8022585478cb07c9d0daded643fb4bd8bdd52", "messageHeadline": "added RK3 test back", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 9, "deletions": 0}}, {"node": {"oid": "8cdf90a162c05645cb98a77945cf6a98ba58b87e", "messageHeadline": "Merge pull request #131 from OceanBioME/jsw/model-implementation-docs", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 345, "deletions": 8}}, {"node": {"oid": "92d1914f166d336855a242869033d71c2d414812", "messageHeadline": "Typo", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "caa3a524350b525bbe4a7246b4d5766eb6676b60", "messageHeadline": "Try to actually achieve the max width behaviour we want", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "c0d8300ad18b79791094dbfb968121305f746722", "messageHeadline": "Fixed \"raw\" html image location", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "a3bd6fbf7381b98dd71b92b7115076ddfca8fda4", "messageHeadline": "Update paper.md", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 8}}, {"node": {"oid": "f58b1f6e1cc3590b647e983872a15d3a47d04b3d", "messageHeadline": "trying to trigger CI", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "98d488364b65e0a61154e78a60681c4e17f129de", "messageHeadline": "Update NPZ.md", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 3, "deletions": 1}}, {"node": {"oid": "92923cd145c8da092a7bfec39449d9c6ecd4f1bf", "messageHeadline": "Also didn\u2019t work", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "0eeccfbbd73ec93818333c3b898885c80776e7ce", "messageHeadline": "changed image diaplay width limit", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "12a927a5398f88baa55e2181d987dc5199e4eef1", "messageHeadline": "Update model_implementation.md", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "bf2bc45f74e95d6d9369d6c4cbe8269d083a366b", "messageHeadline": "Merge branch 'main' into jsw/model-implementation-docs", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "7d43ed6736dedfb9e912bb270c007f48347d4211", "messageHeadline": "Merge pull request #132 from iuryt/iuryt-patch-1", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "06ff6eab799e24f17715fbeb203adb5fe36e273b", "messageHeadline": "Apply suggestions from code review", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 4, "deletions": 4}}, {"node": {"oid": "f85acc12c4b33c5bf551a9ae174b7061b994b9b5", "messageHeadline": "applied review suggesitons", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 3, "deletions": 3}}, {"node": {"oid": "bce0658b6f45483c41364fd6ffec9b61932b36c8", "messageHeadline": "Merge branch 'main' into iuryt-patch-1", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 4, "deletions": 4}}, {"node": {"oid": "ccbe696d581bf16ff91f3e2cb71ef506a71a1ac0", "messageHeadline": "Removed box model feedback", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "463ce651e7e07e5612ad2939cf7e720ba1c45764", "messageHeadline": "moved model implementation page to top level", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 3, "deletions": 3}}, {"node": {"oid": "fb0f7a49c80b0dacd0e6b9aa67cba94ef249ad07", "messageHeadline": "fixed image", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 3, "deletions": 9}}, {"node": {"oid": "a01a633fbe66ab0ad8980580f9a0c1c5025b1488", "messageHeadline": "fixed link", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "541e7d389a96740cf569442e7d32de12533dbbc0", "messageHeadline": "Merge remote-tracking branch 'origin' into jsw/model-implementation-docs", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1056, "deletions": 143}}, {"node": {"oid": "5eb13bacb0cece90ae24ded9f0cd550f5ab2aef9", "messageHeadline": "Tidying", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 5}}, {"node": {"oid": "88840c3e711a6998bf68ad2f3ef663746a49bf63", "messageHeadline": "error", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "e1a9bbdea56b9ad78db0879226a65d7753c1b611", "messageHeadline": "Merge pull request #130 from OceanBioME/johnryantaylor-patch-1", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 4, "deletions": 4}}, {"node": {"oid": "ccddd87a2852d9c1a11f832a7169bcf2b975b398", "messageHeadline": "fixed citation", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 12, "deletions": 3}}, {"node": {"oid": "5655a9ba17b1b2f0258fdfc2943071b8315f4cf2", "messageHeadline": "Update NPZ.md (resize the image)", "author": {"name": "iury simoes-sousa", "email": "iuryt@pm.me", "user": {"login": "iuryt"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "d0f00e48c690fa800cb6cb21ee97c9d96ce92ca4", "messageHeadline": "added model implementaion page", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 335, "deletions": 1}}, {"node": {"oid": "481781de9e12569e9edc2161206b267bbc903870", "messageHeadline": "updated readme video", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "7a2a64758bdc4f35ee208224d426c3c33cc179a6", "messageHeadline": "Update README.md", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 3, "deletions": 3}}, {"node": {"oid": "70e18619cc8be813e2bd6dfba65d711101b55364", "messageHeadline": "Merge branch 'main' into jsw/sediment_with_bathymetry", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1054, "deletions": 142}}, {"node": {"oid": "16af921bbe39bb48f4b101d3663302449b025011", "messageHeadline": "Merge pull request #126 from OceanBioME/jsw/docs-equations", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1054, "deletions": 142}}, {"node": {"oid": "8b2568c000ec8c969143193940955c79692f47ad", "messageHeadline": "Added contributors guide", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 176, "deletions": 2}}, {"node": {"oid": "cec175f0639f3a465b83c131f5868f3409ac5036", "messageHeadline": "deuglified sed defaults a little", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 4, "deletions": 4}}, {"node": {"oid": "70baf37af5466f6d2a449824c993a68e310d56ca", "messageHeadline": "fixed set defaults for LOBSTER in sediment tests", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 11, "deletions": 1}}, {"node": {"oid": "22efa18522899bd478b07cfd25dadc113e780393", "messageHeadline": "fixed sediment model test missing a bit of LOBSTER", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 5, "deletions": 5}}, {"node": {"oid": "65e5652faaacaa4bf1fa7b8a737a00fe1ceff3ea", "messageHeadline": "added info line to work out why LOBSTER/InstantRemineralisation combi\u2026", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 3, "deletions": 28}}, {"node": {"oid": "76a7e687926f04d8fd2539f297d399d420363827", "messageHeadline": "Fixed some variable names", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 4, "deletions": 4}}, {"node": {"oid": "45dcd75091a2486ba2ec7b7c340307f6f8470751", "messageHeadline": "mp4 not gif for docs", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "150d55c8dd44a4f9398b9399f1cefb7e594bbe74", "messageHeadline": "adjusted readme example (takes about 1.5min to run now)", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 68, "deletions": 62}}, {"node": {"oid": "815e1d20a1924e929cdb71ed172330734b55e6e9", "messageHeadline": "changed temp colormap", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 4, "deletions": 6}}, {"node": {"oid": "ef3601f1896c3db8b4937280ed9f7d743f008c71", "messageHeadline": "added back `@example`", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "a997dcdee7b1ca72d933e1b8bf73969e735543aa", "messageHeadline": "reduced temp gradient", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 4, "deletions": 4}}, {"node": {"oid": "6bab12ffbdca5ecd0922b978e7d87b344a94f9d4", "messageHeadline": "Update docs/src/index.md", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "0ddd8cd8ad74814dc56dcd13fffbca873f8167f9", "messageHeadline": "Update README.md", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "e27c0487432e9d6f1d7db293edf740bec700bc36", "messageHeadline": "changed to temp dependant buoyancy", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 61, "deletions": 43}}, {"node": {"oid": "778889e2cdb01540768a5df8ee90c11678be4550", "messageHeadline": "added Oceananigans install for quickstart", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 15, "deletions": 3}}, {"node": {"oid": "4c13967e7b8c3831a812939eb48873af85ef959a", "messageHeadline": "Added lower res gif", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "35b0611de4c3499ffc2bb8654729d58622cea180", "messageHeadline": "changed back to mp4", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "45f9583727211799a25cfe2da1102462e0ae4f41", "messageHeadline": "rearranged examples", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 11, "deletions": 4}}, {"node": {"oid": "30e3e9500ef2816e03628cd0902430e1278b657b", "messageHeadline": "grammar", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "391f8d38ef655e9b86d8022b4bf02842ec1c7f55", "messageHeadline": "Test readme", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "302521a5bd256252c72822424d24cd58ba662cd5", "messageHeadline": "Update LOBSTER.md", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "ead737dc57d484bf1398eb35cbcd0ddc68a6a98f", "messageHeadline": "added better fig 3 description and labelling + other review suggestions", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 4, "deletions": 3}}, {"node": {"oid": "c7ee2f1bb7a98fbf0a61ae64832127707afeaeec", "messageHeadline": "bugs", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 13, "deletions": 13}}, {"node": {"oid": "e912a2226a291d7cf856cf4beac0a7d9d6a15788", "messageHeadline": "Change buoyancy front animation in docs to gif so can be used in readme", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "b99c34b37a05864ba9dfcc210bb473df8899ab77", "messageHeadline": "bump patch number", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "4fc0449da4dfdbe334c01f63468c74161c8e88d1", "messageHeadline": "added flow diagrams", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 38, "deletions": 0}}, {"node": {"oid": "cdcdfe41271bffa1f85e2c62a6581faaa5bfee6c", "messageHeadline": "correction in NPZD model docs", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 0}}, {"node": {"oid": "f0762cc70d3562640922fc192bc0171f34254503", "messageHeadline": "added remaining parameter variable names", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 112, "deletions": 30}}, {"node": {"oid": "bd1e182b17024e146cbe08a6e5b09ce7e8b4b9f1", "messageHeadline": "Added parameter variable names for kelp", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 67, "deletions": 6}}, {"node": {"oid": "4bfc4fdfe98a53100912f3deb7b96b89a0655f6f", "messageHeadline": "Added parameter variable names for LOBSTER", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 34, "deletions": 1}}, {"node": {"oid": "b9fa26f3935b5d4ba9a43414770c4b9819cedbfa", "messageHeadline": "Added parameter variable names for NPZD", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 15, "deletions": 0}}, {"node": {"oid": "d4bd825300d3f4380b5dd1197bfda27bb6f233e3", "messageHeadline": "Flipped phytoplankton color for concistency", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 0, "deletions": 0}}, {"node": {"oid": "ac3886edc83488ab9fd56c463335271267e7cc70", "messageHeadline": "rendering issue", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "3102b6b778e085fc2b6be1797895df59382832ac", "messageHeadline": "another rendering issue", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 1}}, {"node": {"oid": "3f815029051248e759dbcfc67a88763bb31f11e7", "messageHeadline": "increased example resolution", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "16eeb8eaa5437621958a242900e6fc33258277e2", "messageHeadline": "Fixed rendering issue", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 4, "deletions": 4}}, {"node": {"oid": "598405b067d738d12f774c54763a05e32f1535ae", "messageHeadline": "Added near global example code", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "7bbeecabba6465d94be591d6c364156fa8f3f585", "messageHeadline": "fixed warming", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 4, "deletions": 5}}, {"node": {"oid": "9c349875eff3709b8c50146ef95def79df078643", "messageHeadline": "fixed sediment for box model (mainly for docs)", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 1}}, {"node": {"oid": "2fc682be50f756b5dae282492a143ba9e866a1dd", "messageHeadline": "fixed sediment to work with bathymetry and across different grid and \u2026", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 181, "deletions": 72}}, {"node": {"oid": "f5333f8266ec876b7707e40779258d8de2fcd553", "messageHeadline": "Word change", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "10ecf891faf2b2b49fcbf548832dd1274d6cc45a", "messageHeadline": "just read the docs and realised `$` was a depreciated way to write latex", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 255, "deletions": 110}}, {"node": {"oid": "cd9255d0c61d807c48ecb089e816e5b23dffe16b", "messageHeadline": "reduced resolution of readme example, lets see how it looks", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 4, "deletions": 4}}, {"node": {"oid": "f4b47f8913042093adad4e3484e2d8624e8def3d", "messageHeadline": "updated docs make", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 3, "deletions": 1}}, {"node": {"oid": "61d61068614efc599a84ab38a7084cf10d34c836", "messageHeadline": "fixed slatissima model", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 3, "deletions": 3}}, {"node": {"oid": "002958cab4a9091fab24fc9f59fee7cbebd49254", "messageHeadline": "correction in NPZD model", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 3, "deletions": 3}}, {"node": {"oid": "695b9f5863ccb74efa1122c3562525d4770e435a", "messageHeadline": "added kelp model equaions and fixed some links", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 91, "deletions": 4}}, {"node": {"oid": "de6ff8ac45b50cf3ac891e867ae8a61c02858c88", "messageHeadline": "JOSS can't render unicode subscript 0", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "dc2ea5d3878a2aca2c85162d30c7ea820443d449", "messageHeadline": "Attempted to add a couple of sentences about the ease of implimenting\u2026", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 12, "deletions": 1}}, {"node": {"oid": "221fb6888c2f3cf9902d5143bdffe47f7f6ea3c5", "messageHeadline": "added light attenuation equations", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 13, "deletions": 1}}, {"node": {"oid": "43a8fc60383ffe331b4c747422eded86bff7d31e", "messageHeadline": "corrected sediment equations", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "8585a22717d7839a9a098c23ca3fc08e016bc5b2", "messageHeadline": "added gas exchange equations", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 86, "deletions": 0}}, {"node": {"oid": "cd8f04a6c93dde24599f6e99a8d53e4ad5941994", "messageHeadline": "added sediment model equations", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 108, "deletions": 23}}, {"node": {"oid": "d6582c6147c011f5688f70439415a3e19e18b184", "messageHeadline": "minor sediment corrections", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 4, "deletions": 3}}, {"node": {"oid": "d518b352f1fdf0ed59dedeec7ac2374c6f0f4f2c", "messageHeadline": "added model equations for bgc models", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 92, "deletions": 0}}, {"node": {"oid": "2594ec930d26ff7c361ddb34fdac1dafd522b940", "messageHeadline": "removed old and redundant examples readme", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 0, "deletions": 44}}, {"node": {"oid": "7a680aff7ba2e103447276fa8afdaa9b584c7dd0", "messageHeadline": "added panel labels to column fig for concistency", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 0, "deletions": 0}}, {"node": {"oid": "406dbf90ff592dd4d148b25a73e28b9f4a730424", "messageHeadline": "improved examples table", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 3, "deletions": 3}}, {"node": {"oid": "f129f682e126297e3b64f267c1965f1c7f4c179d", "messageHeadline": "improved concistency in formatting module and package names", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 4, "deletions": 4}}, {"node": {"oid": "ef411a05538f422319f22894319dfcea5d56e9e1", "messageHeadline": "added an ORCID", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 3, "deletions": 1}}, {"node": {"oid": "18537a6cb1c73382181c35077ac3bc8f4fddbebc", "messageHeadline": "updated figures scripts to latest version", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 5, "deletions": 7}}, {"node": {"oid": "96d727dd04deb31383b12ff0e53be7c849590728", "messageHeadline": "worked, now for the subscripts", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "ec3b155ab9bf6ada95e22aff0d02eb8b3b939712", "messageHeadline": "how to make super scripts in this version of markdown", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 10, "deletions": 10}}, {"node": {"oid": "51f10d01de709e429b3685fa6a28d8dcb254f60c", "messageHeadline": "attempted to fix table mk3", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 10, "deletions": 15}}, {"node": {"oid": "df65b9dc9bc1f879319ed34005a64e384f79fd98", "messageHeadline": "attempted to fix table mk2", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 16, "deletions": 3}}, {"node": {"oid": "6f661fdb75b080b6d663455168ce33218427bbc7", "messageHeadline": "attempt to fix table column width", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "d380c6493719b268c75999f65c2a0fb4620b4b93", "messageHeadline": "Added more descriptive caption and panel labelling to eady example", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 8, "deletions": 3}}, {"node": {"oid": "b67279201b5a0ca99256a01319b4f43e72ae6e41", "messageHeadline": "added examples table", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 11, "deletions": 1}}, {"node": {"oid": "02ff1e3db490bd14c6fc2b355f83e7ecf943b1bd", "messageHeadline": "added note about speedup from prescribed fields", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 3, "deletions": 2}}, {"node": {"oid": "2592395b3226edfbfce1b6c4e15dec615118dbfe", "messageHeadline": "added more detail to 'tracer based' models", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "e413a2703e1b68a13290a203af15f7ec1bb2232e", "messageHeadline": "Added equal contrib flag for alphabetically listed authors", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 4, "deletions": 0}}, {"node": {"oid": "c59fb68a7a33e377bf29015f220caa5eb50fe136", "messageHeadline": "Merge branch 'main' into joss-paper", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 630, "deletions": 325}}, {"node": {"oid": "3db02078b605c0b0b27a0941fb1082df7e029ec1", "messageHeadline": "capitalize Saccharina", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 2}}, {"node": {"oid": "4581e05cab3056fe5240f7f3d4e67e58c25f4ae0", "messageHeadline": "bib file alignment", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 86, "deletions": 85}}, {"node": {"oid": "d310a710ac64b86c69c7a33dd911fbf7ffa2fb93", "messageHeadline": "bib file cleanup", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 16, "deletions": 23}}, {"node": {"oid": "dc7b0ef7e924b341dbe00d7f3337b1d8397b6406", "messageHeadline": "minor edits to Statement of Need", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 9, "deletions": 8}}, {"node": {"oid": "0dddb2701fa59b17caabe32a2297233c2baf3fce", "messageHeadline": "changed scaling on near global fig", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 0, "deletions": 0}}, {"node": {"oid": "e2c0c71d5a5cf547ed870fbf579f421361ab0745", "messageHeadline": "Removed some repatition", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 9, "deletions": 9}}, {"node": {"oid": "0c391151ad9993698679c26f7b35727f2a7fca02", "messageHeadline": "Grammarly", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "a5df2de23617e22aa5854f2f8046706b2a0257a8", "messageHeadline": "fixed near global plot colorbar", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 0, "deletions": 0}}, {"node": {"oid": "99bfdbd204e56b0afefe243853e15ea05dc9ecb5", "messageHeadline": "added near-global model figure", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 11, "deletions": 5}}, {"node": {"oid": "d67c92407b37804bbbc973cd14ac3849377b6525", "messageHeadline": "added missing doi", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 1}}, {"node": {"oid": "0ac0787815572259ab3db57e4a127c47f5c95b13", "messageHeadline": "added reference", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 9, "deletions": 1}}, {"node": {"oid": "7aab6fa6c61a44ee8956d82a8929bc13c57b51f5", "messageHeadline": "Spelling and grammar", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 6, "deletions": 6}}, {"node": {"oid": "2ec90fd04084f872223ed76f080ff76a84e42790", "messageHeadline": "first attempt at restructuring for explitict statement of need", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 37, "deletions": 14}}, {"node": {"oid": "1bf27caf15c414d658a7ce474f439e2ab83f6fe8", "messageHeadline": "Merge pull request #125 from OceanBioME/ncc/citations", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 229, "deletions": 161}}, {"node": {"oid": "d9dc58d8972c64aa6f6c79299272cfa933a581be", "messageHeadline": "Added new model to docstring", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 6, "deletions": 3}}, {"node": {"oid": "16a21b8fb81e09de68d04ea41719624b01419df5", "messageHeadline": "Merge branch 'ncc/citations' of github.com:OceanBioME/OceanBioME.jl i\u2026", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 0, "deletions": 1}}, {"node": {"oid": "1ff160624818bd559ece83c9edc062be73c85ac7", "messageHeadline": "convert doctest -> example", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 28, "deletions": 25}}, {"node": {"oid": "4b49e241a6e1eee9da7c566a0b0d3031547736bc", "messageHeadline": "Update Project.toml", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 0, "deletions": 1}}, {"node": {"oid": "579808b7eddf828cabdca7b7a24fe28144a7ee95", "messageHeadline": "slightly cleaner readme example", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 18, "deletions": 15}}, {"node": {"oid": "5974aecd4bb89dcf2d32b4792112a175fd0e6cb1", "messageHeadline": "bit of clenaup", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 5, "deletions": 6}}, {"node": {"oid": "87971ee521526448175c5a47bbcbb840486d8280", "messageHeadline": "fix doctest", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 3, "deletions": 1}}, {"node": {"oid": "3e763b2224053033cdab1395595360ab42b3ac84", "messageHeadline": "minor formatting", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 3, "deletions": 2}}, {"node": {"oid": "c18a49e447e4ae9a3bab68022d56a469da98d11d", "messageHeadline": "add the commas", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 63, "deletions": 63}}, {"node": {"oid": "fc3eeba605046d76a2c9f47e6770cac1493f5b92", "messageHeadline": "better ref in docstring", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "e29c69824d4eb81c2cffa3d115449fd1a7fab6fc", "messageHeadline": "fix doctest", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "f6aa4d63baf83e446c7266959c8b046c566929fb", "messageHeadline": "anoter citet", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 3, "deletions": 3}}, {"node": {"oid": "0f2cfcc972564db7d425af852c096e9545d86675", "messageHeadline": "better doctest", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 15, "deletions": 16}}, {"node": {"oid": "cdebd6d5927167e1b121f8fe0033dce9356b40f7", "messageHeadline": "convert gas exchange example to doctest", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 24, "deletions": 6}}, {"node": {"oid": "256c3a3980ce05abeda8a960a1a6855e43960482", "messageHeadline": "remove draft flag", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 2, "deletions": 3}}, {"node": {"oid": "1bf475c1ab0b52ebd56cbc3ebab9bdfd0dad33d0", "messageHeadline": "remove OceanBioME from docs project", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 0, "deletions": 1}}, {"node": {"oid": "7997c7055d3bb250fa0b8506056eb95225c58afd", "messageHeadline": "better refs; use citet", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 105, "deletions": 62}}, {"node": {"oid": "be85777d3b5f6876a8a59b908712b419a4f406fc", "messageHeadline": "Merge pull request #121 from OceanBioME/jsw/instant-remineralisation-\u2026", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 417, "deletions": 180}}, {"node": {"oid": "891fc26e1750a047ea52371b0b96aac50f51d3e8", "messageHeadline": "fix typo", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 4, "deletions": 4}}, {"node": {"oid": "a110755cc53d12ebfcd1d4fd774bdc73c2e1a321", "messageHeadline": "Merge branch 'main' into joss-paper", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1499, "deletions": 1922}}, {"node": {"oid": "203013c183b59e4307c56d303c0a3301ac0c4d7f", "messageHeadline": "merge main", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 184, "deletions": 91}}, {"node": {"oid": "d53ea6b6cb3267f5cc9d570714eafe3cbd8360ff", "messageHeadline": "Merge pull request #122 from OceanBioME/ncc/julia-1.9", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 184, "deletions": 91}}, {"node": {"oid": "fdea4160603e0ad7a3bda6370cf904d2d479f695", "messageHeadline": "Update src/Boundaries/Sediments/instant_remineralization.jl", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 0, "deletions": 1}}, {"node": {"oid": "42d618330cd907b7069b71a3bff613c329e12c32", "messageHeadline": "formatting", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 6, "deletions": 7}}, {"node": {"oid": "0974e30b0d47a3d5fc4ed814799627d3ef7ae7aa", "messageHeadline": "added citation and simplified remineralisation recipient", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 23, "deletions": 12}}, {"node": {"oid": "d001fe49bb82315f962b92609d58b49fc04f8c2c", "messageHeadline": "Merge branch 'main' into jsw/instant-remineralisation-sediment", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 56, "deletions": 49}}, {"node": {"oid": "a26fe3df7287253f91c66927f50c1efdf2821fcc", "messageHeadline": "fix typo", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 17, "deletions": 17}}, {"node": {"oid": "df761e4467d1e7247e9f8c9499bdf10dae68e017", "messageHeadline": "fix typo", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 13, "deletions": 13}}, {"node": {"oid": "552b84cb6352dcf1bbdda83cec5a1d58f2c12a98", "messageHeadline": "fix typo", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 7, "deletions": 7}}, {"node": {"oid": "336dc46ba84d576389f2fdcde05c7e3aeaee1a8e", "messageHeadline": "Oceananigans v0.85", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 5, "deletions": 5}}, {"node": {"oid": "02261b3421b82c88ca94f9795d10d79f550c29eb", "messageHeadline": "resolve", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "4e09e04dc7082d60f5730d137961575506474680", "messageHeadline": "update Oceananigans compat entry", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "8d525016fbebda5a1373e75bf108d657dcb13426", "messageHeadline": "update Oceananigans compat entry", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "29a686cdd53dcd37ac420162740e4d4cc5386617", "messageHeadline": "Merge branch 'main' into ncc/julia-1.9", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 56, "deletions": 49}}, {"node": {"oid": "495e54751025b47f85ed25ebda5005f7d2396bef", "messageHeadline": "Merge pull request #124 from OceanBioME/ncc/example-cleanup", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 56, "deletions": 49}}, {"node": {"oid": "0c5909f48a9a79f1fa2e0f2cd44c538e129f64e3", "messageHeadline": "drop get_local_value", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 0, "deletions": 2}}, {"node": {"oid": "d630cbd46b775c2d7862e29016ecd061960603c4", "messageHeadline": "drop julia v1.8", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 7, "deletions": 4}}, {"node": {"oid": "59233cc31931665799e957d5b32c96e5308df354", "messageHeadline": "bit better end state", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "e3a505b606c785b3a4488d42eba15fe5f01e8221", "messageHeadline": "Merge remote-tracking branch 'origin' into jsw/instant-remineralisati\u2026", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 33, "deletions": 307}}, {"node": {"oid": "c794fbb4a06988bd13f1aea1e9eb774d5c34db67", "messageHeadline": "improved sinking flux to not make users use Oceananigans private API", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 22, "deletions": 14}}, {"node": {"oid": "491775b3eff3638d355f0f5abfb83b2e5bfa7bd2", "messageHeadline": "bit better thermal wind explanation", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 4, "deletions": 2}}, {"node": {"oid": "1ab7ad7aa5cbe071761dfb5ce72e77a4f965bcc8", "messageHeadline": "merge main", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 67, "deletions": 293}}, {"node": {"oid": "f99d480cf3325c13972fffada2af99ac102057bb", "messageHeadline": "Merge branch 'main' into ncc/example-cleanup", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 295}}, {"node": {"oid": "9cea8c4d9bb6c25396a3c708d3ea7651311cdc42", "messageHeadline": "Merge pull request #123 from OceanBioME/ncc/drop-DiffEqBase", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 295}}, {"node": {"oid": "f846a3ab3bc92bdcad9d51c0f67ac942d07d736e", "messageHeadline": "Merge branch 'main' into ncc/example-cleanup", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 43, "deletions": 30}}, {"node": {"oid": "1aa77d32418253a97906d46fda1aa2536e91aa50", "messageHeadline": "Merge pull request #120 from OceanBioME/jsw/fix-light-for-lat-lon", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 43, "deletions": 30}}, {"node": {"oid": "0f36e759024b00f0bce6b606444e11c80f8557e4", "messageHeadline": "back to CairoMakie", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "044ddc1da2f8d64fac0184755dd1c14adf0269f9", "messageHeadline": "more noise at center of domain", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 4, "deletions": 2}}, {"node": {"oid": "d1fc31a8ce07a8eda985d3cc06a9509a3d3217c3", "messageHeadline": "add more explanation for background state", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 46, "deletions": 43}}, {"node": {"oid": "480262803140ed6b7afb965b79e679e5f60ce945", "messageHeadline": "M\u00b2 is the shear squared", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "bc63cc4ce2b9798fdce1bf308938ea98ba1b39ba", "messageHeadline": "fix units for M\u00b2", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 3, "deletions": 3}}, {"node": {"oid": "3835006b8fc0a8897f77f68cf0a1518df0d8950e", "messageHeadline": "minor cleanup + add missing dep for box_npzd", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 13, "deletions": 13}}, {"node": {"oid": "3634702a5bbabd88c05cc4a22b1cb0b2031cce1d", "messageHeadline": "remove DiffEqBase from deps", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 295}}, {"node": {"oid": "cd7df65e111784fc7eea1d66f671825eef14d1f0", "messageHeadline": "remove styfle/cancel-workflow", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 0, "deletions": 6}}, {"node": {"oid": "1c5389290e3a0dee24193bd07b0c987bd3eb47e1", "messageHeadline": "add version for styfle/cancel-workflow-action", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "604556ed147fa3bc3774877df9e04e23202a5940", "messageHeadline": "add styfle/cancel-workflow-action", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 6, "deletions": 0}}, {"node": {"oid": "515f8f76c9319515b527a1de440b7909f737ebc0", "messageHeadline": "fix typo: denitrifcaiton_params -> denitrifcation_params", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 37, "deletions": 37}}, {"node": {"oid": "2391f08ecbe2986e827e1992140e52809f3776b6", "messageHeadline": "better test messages", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 3, "deletions": 3}}, {"node": {"oid": "fd71643b3061fef6d55262ad44cd183cd28b17ff", "messageHeadline": "add codecov badge", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 0}}, {"node": {"oid": "61ea1c7645ceaf92ff5dc06b029c865dd5fce355", "messageHeadline": "drop const from local var", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "1922932bc64e8b26ea3a22cae41ae2db6e5ebea9", "messageHeadline": "up Oceananigans + CI and Docs on julia v1.9", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 210, "deletions": 174}}, {"node": {"oid": "429607403affb173a3405599dbb089b65c0c9470", "messageHeadline": "code cleanup", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 18, "deletions": 20}}, {"node": {"oid": "c62659e81591a3abc777b9b1483fe2013878bfbd", "messageHeadline": "run doctests as part of tests", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 6, "deletions": 0}}, {"node": {"oid": "96121808c9481c5e45e78fed2cb140a85532f21d", "messageHeadline": "convert SimpleMultiG into doctest", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 46, "deletions": 26}}, {"node": {"oid": "11475053477d78f19517000506106c4aa3f7423b", "messageHeadline": "runs locally now", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "c460d226ac92c6697cc4214976d06c79ffe67926", "messageHeadline": "maybe now", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "40da8142f28ac3899b546d720e3a926567e4cf2d", "messageHeadline": "another mistake", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "f0be38639b2dc5a40db0dd6de7c3503375e2b5d2", "messageHeadline": "Apply suggestions from code review", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "46087e0fce7310f4cd0b448da36112e62ed89731", "messageHeadline": "typo", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 6, "deletions": 6}}, {"node": {"oid": "37e9d9afcdfa2bc3ff4fa95594e2735ca3b34e2e", "messageHeadline": "typo", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "ebac72f68ebef78bae6495a8937abe4db35f5280", "messageHeadline": "fixed parameters docs", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 1}}, {"node": {"oid": "e740d917a8ca5af715ec2def473e32658795ff77", "messageHeadline": "fixed new docstring", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "96e72e5e7d2d86af03537d5e845d1c763b2fda8d", "messageHeadline": "fixed docstring and added both timesteppers back", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 16, "deletions": 109}}, {"node": {"oid": "0be6fc7c4fa70eb049de00c4ed2dc145bf5a3fb3", "messageHeadline": "fixed slatissima", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "9558d8571193f92a9b8bcd42dff947d221cf5e47", "messageHeadline": "fixed test (maybe)", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 4, "deletions": 4}}, {"node": {"oid": "1ec431a716c2f0dc2db55d586310fc390b09fdb4", "messageHeadline": "think I've fixed particles and sediment together", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 11, "deletions": 14}}, {"node": {"oid": "32ccb3c859967c0699a931060fe94574051d58c1", "messageHeadline": "added test that sediment and particles work together", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 97, "deletions": 0}}, {"node": {"oid": "a720790cb8da50485498a826fc62fd43801a5645", "messageHeadline": "made sediment finally work!!! (and added tests including conservation)", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 170, "deletions": 96}}, {"node": {"oid": "bfb86d9bf0b57ad98d3efd6eaf0556b6e1cf871a", "messageHeadline": "tests light over different grids and models", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 29, "deletions": 10}}, {"node": {"oid": "f24f449c3d41370ce29de5609985f6800fb44ed4", "messageHeadline": "Merge remote-tracking branch 'origin/jsw/fix-light-for-lat-lon' into \u2026", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 14, "deletions": 20}}, {"node": {"oid": "e023c73fbf93dbcf56e48cf66c71b068d22a0ea9", "messageHeadline": "added an instantly remineralising sediment", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 122, "deletions": 3}}, {"node": {"oid": "cf5c4c3d49122322a4e3ecf9614be274a3404cfa", "messageHeadline": "corrected mistake", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 2}}, {"node": {"oid": "a3b078bb3e3be89a52ecf1613c45bdd7fb841d9b", "messageHeadline": "tidied kelp model", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 0, "deletions": 9}}, {"node": {"oid": "9b4f2ce032797acb0715192657081581492790d6", "messageHeadline": "changed to native coodinates for surface PAR", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 6, "deletions": 4}}, {"node": {"oid": "c530081c5603229558693720f4d4acc328d5c033", "messageHeadline": "code cleanup", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 4, "deletions": 2}}, {"node": {"oid": "c3638bfdfbadbb61f1ebd55dc7b082c2017d1f17", "messageHeadline": "use user-facing znodes for default depth in SimpleMultiG", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 2}}, {"node": {"oid": "dac9c2a650e76a78f3fbdf12866dc257e9e02624", "messageHeadline": "code cleanup", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "757ae9f74059959d06b8534c354e9097b6abcf0a", "messageHeadline": "Applied review suggestions", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 3, "deletions": 2}}, {"node": {"oid": "448fde91a201a7173dd4ca60ece3e96676eb916e", "messageHeadline": "oops", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "77ded3668354f67cae54da469dea2c7bdcfab54c", "messageHeadline": "changed `xnode` use to `xnodes`", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 4, "deletions": 4}}, {"node": {"oid": "e82d7f57bb4aa5bf2dad063915728d384160da6e", "messageHeadline": "Merge pull request #118 from OceanBioME/ncc/joss-badge", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 0}}, {"node": {"oid": "569a71bd32b4544a70d0c52da344335d1ba58931", "messageHeadline": "Update TagBot.yml", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 18, "deletions": 1}}, {"node": {"oid": "c2d05594d3e4b5d7f46f5ea2c8fc5ede673508ba", "messageHeadline": "Update TagBot.yml", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 0}}, {"node": {"oid": "924f97606cb4903a15d0808586788d4041cb71f2", "messageHeadline": "Update TagBot.yml", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 19}}, {"node": {"oid": "2784eacd9278ce5b2ef401f33c20442482e28286", "messageHeadline": "add orcid id", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 0}}, {"node": {"oid": "bf4ba47038f3a7bfec777a1e52fdf34df73adce3", "messageHeadline": "add JOSS badge", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 0}}, {"node": {"oid": "994f9d23f3e30b14eec5922a8cf39a5e68032cb6", "messageHeadline": "add some doi", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 17, "deletions": 11}}, {"node": {"oid": "2e3548c1a48dbd13c9f9e07953269a925e61c0a9", "messageHeadline": "Update TagBot.yml", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 18, "deletions": 1}}, {"node": {"oid": "d80a3d6668fff598210ca6b09fb64b437708ae87", "messageHeadline": "Update TagBot.yml", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 0}}, {"node": {"oid": "3c4514fea7ec4401638f95ac4bc9c1bff73acd8b", "messageHeadline": "Update TagBot.yml", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 19}}, {"node": {"oid": "9b402c904787b71737fc44059e21bb18131044e1", "messageHeadline": "Merge pull request #117 from OceanBioME/jsw/typo", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 39, "deletions": 34}}, {"node": {"oid": "4a26202dde425b7c9983af380374180dc3e10582", "messageHeadline": "fix leftover from merge conflict", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 0, "deletions": 42}}, {"node": {"oid": "d9592f2a87848c8e83d5dd70b054e5b3f65c2db2", "messageHeadline": "merge main", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 236, "deletions": 137}}, {"node": {"oid": "188445af98876a2f1cfc258d2a9d1123e583f13a", "messageHeadline": "Merge pull request #115 from OceanBioME/ncc/docs-npzd", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 221, "deletions": 169}}, {"node": {"oid": "60f2517bc1903a4e90d3959bca19cdc27e095212", "messageHeadline": "bumped minor version because this was in the public API", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "19c4fda35773e202b36c8ec6e191405aa92c4fd4", "messageHeadline": "find and replace typo", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 26, "deletions": 26}}, {"node": {"oid": "1997775f1725aa83dcee90d19d3240bbc807d4d2", "messageHeadline": "add example subtitle", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 3, "deletions": 0}}, {"node": {"oid": "32ba9ccc8d08b31c4b3cf8ea907f606081697bca", "messageHeadline": "another typo", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "62ef87b9544e05ba0f0c2af3bc222f206a87b9ef", "messageHeadline": "fix typos", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 4, "deletions": 4}}, {"node": {"oid": "47f25532c8292cbd665ddd851a314904fa3085ac", "messageHeadline": "add example-doctest for LOBSTER", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 81, "deletions": 61}}, {"node": {"oid": "38f45a393dae481e0b4466155b0a967ba9b0b6e3", "messageHeadline": "docstring format + typo", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 18, "deletions": 5}}, {"node": {"oid": "f1ddf3715101e0ec3bf2c2a94911e630aaac6d84", "messageHeadline": "fix some refs", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 7, "deletions": 5}}, {"node": {"oid": "a08028123f58a5eed9aad5005e8fb664953f6842", "messageHeadline": "fix typo", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 4, "deletions": 4}}, {"node": {"oid": "c0f38f688ec3ae9aefa5e9454885da20df66e335", "messageHeadline": "code alignment", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 6, "deletions": 6}}, {"node": {"oid": "f758bb79e097cde3b8e7c405df6c03ec715e8871", "messageHeadline": "align in docstring", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 23, "deletions": 23}}, {"node": {"oid": "41f66cf5e61b9db28f29ee5eaf9b4f0902a25202", "messageHeadline": "some code cleanup", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 13, "deletions": 13}}, {"node": {"oid": "9e5e3c814248c94513a25fcef43dbdb5594d6efc", "messageHeadline": "remove empty line between method and docstring", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 7, "deletions": 8}}, {"node": {"oid": "b7bcd5df5efe0162426c2af3c191670cdd63d68d", "messageHeadline": "fix typos, add admonition, remove empty line", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 21, "deletions": 24}}, {"node": {"oid": "ad41b44997a80d0b06efb5544d8839a4f7f9d0cb", "messageHeadline": "minor code beautification", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "905275bbb71664a437ef4fb0cd2794568b22a5c7", "messageHeadline": "add example/doctest to NPZD + remove stray empty line", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 58, "deletions": 40}}, {"node": {"oid": "2815e3633cc16a2a7bb732bdd85b1b4768330326", "messageHeadline": "Merge pull request #114 from OceanBioME/ncc/docs", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 158, "deletions": 151}}, {"node": {"oid": "8bc2d6e58709659cf6987e4ae91b47fe55c90ea2", "messageHeadline": "seeded random number for eady example to stop intermittent failure", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 0}}, {"node": {"oid": "8f5a4103c3464080ca9821b586d617966ef3f9fe", "messageHeadline": "Merge branch 'main' into ncc/docs", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 3, "deletions": 6}}, {"node": {"oid": "343f74459afcda308f19ad4136155dcdd0282ce6", "messageHeadline": "bump patch number", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "61c012010441b75d05818c96799b32e128a408c1", "messageHeadline": "Merge pull request #113 from OceanBioME/jsw/examples-advection-fix", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 3, "deletions": 6}}, {"node": {"oid": "330b74465258d54abca11cf9365d5e13cb9d1f45", "messageHeadline": "Update src/Boundaries/Boundaries.jl", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "478e68d9d0abd51bb56122926a83226032c4c0dc", "messageHeadline": "Update docs/src/index.md", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "279dd4289a7d74ddfd05011853db9e6061905598", "messageHeadline": "bit of code and docstrings cleanup", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 55, "deletions": 30}}, {"node": {"oid": "53d36a18ca5bbb85237b03efe1ee3dd4fb432963", "messageHeadline": "typos", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 5, "deletions": 5}}, {"node": {"oid": "14d7491087d4c5c66acdadf4837a64c336ba9cb1", "messageHeadline": "empty line", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 0}}, {"node": {"oid": "1840054a82e08a851ebe002c08c01540ad2e1ac5", "messageHeadline": "fix typo", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "eea66e970531ae6294733729745087f5c45ba47e", "messageHeadline": "rephrase docstring", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 7, "deletions": 2}}, {"node": {"oid": "12e78738d5e011f45db117580212a1bf7f62fed6", "messageHeadline": "some cleanup + fix some bibtex entries for better rendering", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 14, "deletions": 40}}, {"node": {"oid": "d09619c247f7cf5690a12267f282bf50fe26dd72", "messageHeadline": "Update docs/src/index.md", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "c6d6d95f5b0a0c213785ac53dbf8a6d3cd882116", "messageHeadline": "no timestep wizard", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 5}}, {"node": {"oid": "6a56b45aa553a2e4ff50f091d95274ed85db2d69", "messageHeadline": "some docstring and code beautification", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 54, "deletions": 43}}, {"node": {"oid": "87d3e7540e56eaa42019b9872df9419d99bbc2c5", "messageHeadline": "add ref id + remove disclaimer", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 5}}, {"node": {"oid": "30344bc4d94ec9dae20f2ae0281a646e5cf9debe", "messageHeadline": "fix pseudocode", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "dce91dfeaa2b74c6fc55498245fbeaf353c99931", "messageHeadline": "add id ref", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "3e6f34324df3dfcef6fdaeb4cc434157c2407525", "messageHeadline": "some reordering/rephrasing; simpler example; links to resources", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 15, "deletions": 15}}, {"node": {"oid": "de4821a028ae8eb58760f0ed5791d520f83758ae", "messageHeadline": "delete gallery", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 0, "deletions": 3}}, {"node": {"oid": "5c9f6be871adf5322434883dc5046dbcfaff0981", "messageHeadline": "added advection back to examples", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 3, "deletions": 6}}, {"node": {"oid": "2baeedef84999828c6caaf83a86cd6e2b4225308", "messageHeadline": "Apply suggestions from code review", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 8, "deletions": 8}}, {"node": {"oid": "f83a4dfe2cd396a48dfd6bc543e8b8984eb49228", "messageHeadline": "Merge pull request #110 from OceanBioME/jsw/update-dependencies", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 345, "deletions": 838}}, {"node": {"oid": "d6c6132f115f02b711c9a2dd5c9ec529e65c379e", "messageHeadline": "Merge pull request #112 from OceanBioME/ncc/readme-gpu", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 10, "deletions": 0}}, {"node": {"oid": "d26400027b9175a786f049900961480a7e641ef9", "messageHeadline": "add GPU info in README", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 10, "deletions": 0}}, {"node": {"oid": "22075253f9a1fd13e7731df53562fd07a7ad56ae", "messageHeadline": "use julia v1.8.5", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 122, "deletions": 147}}, {"node": {"oid": "a293972e625259d67cfea609e1d91914b4d15cce", "messageHeadline": "deleted NPZD example", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 0, "deletions": 154}}, {"node": {"oid": "75b3d3620bcbda246e609e3c6499338972664f62", "messageHeadline": "forgot to add change", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "15ce0aeaf7bd6a507df52d69dfda52a6811f9610", "messageHeadline": "fixed NPZD example and timestep wizard", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "1cc5f75a91af606b92f9657c4ba050406653ed33", "messageHeadline": "removed redundant code from particles", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 43}}, {"node": {"oid": "deb98c71381c4cf9dd1752c9f85a6a0fa6168d73", "messageHeadline": "NPZD wasn't being tested", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 0}}, {"node": {"oid": "d08253f712057cd33ebca9f0a8028004ed9126aa", "messageHeadline": "oops", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "13f9530b0014e7432440d8ba07e6a2aab9f8f5eb", "messageHeadline": "fixed particles not being called", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 13, "deletions": 12}}, {"node": {"oid": "621b917b37e07cdc0ec3dddc188176bf2272d57c", "messageHeadline": "Edited author order to alphabetical", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 5, "deletions": 5}}, {"node": {"oid": "f60bc16012f2b7b5dbccaa2e0167323803cc284c", "messageHeadline": "missed a KA bit ... again", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 2}}, {"node": {"oid": "3e4ac1d9c298219c17062064b758fe885b892b01", "messageHeadline": "missed a KA bit", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 2}}, {"node": {"oid": "ecdd316ff3c850faf3594ee697b33fa262612696", "messageHeadline": "bump version", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "1a74a0490468eb6d20d7f44d04cbcb4ba834b39f", "messageHeadline": "added negativity protection tests because KA update broke them", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 48, "deletions": 2}}, {"node": {"oid": "5e236f459e73463ee77ea78cb363a873febe6363", "messageHeadline": "more kernel launching reminants", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 8, "deletions": 16}}, {"node": {"oid": "dc5389c3348982fc5993853d5ccece541d5c8f51", "messageHeadline": "removed old stuff", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 314}}, {"node": {"oid": "f2eccb9465517251364b8f92ae1e16b0fcb79e8d", "messageHeadline": "updated docs Oceananigans version", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "317ad845f37258b9eb1bd8e292f276702e27df4b", "messageHeadline": "fixed drift velocities in models", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 4, "deletions": 3}}, {"node": {"oid": "4c7747b02a5527c8bebcc4c31dcd46f91b48a326", "messageHeadline": "more kernel launching reminants", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 3, "deletions": 7}}, {"node": {"oid": "d60f5966695bc23e3501d349c91ef1e61e0e6d83", "messageHeadline": "final traces of specifying adveciton scheme", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 3, "deletions": 5}}, {"node": {"oid": "7133bf370954f1bc45ff4631c48ebc9d596cdae5", "messageHeadline": "random remaining changes", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 7, "deletions": 7}}, {"node": {"oid": "9030a6e530b7ad053a2f5944a375f6416c7f7478", "messageHeadline": "updated lagrangian particles stuff", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 12, "deletions": 12}}, {"node": {"oid": "6d8f241b577052f83c5233153b1b82d31d400393", "messageHeadline": "removed biogeocghemcial adveciton scheme stuff", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 61, "deletions": 104}}, {"node": {"oid": "64e4310556592c545c85c8fe70d7e5117e3ae9ee", "messageHeadline": "updated kernal abstractions stuff in sediment timestepping", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 21, "deletions": 49}}, {"node": {"oid": "3c67d54683dc9aaceda4c82ab1844bf71d95eeeb", "messageHeadline": "bumped dependencies", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 300, "deletions": 222}}, {"node": {"oid": "1be82ca01162ddfb7f59a23958d91b69d76b80ab", "messageHeadline": "Merge pull request #109 from simone-silvestri/main", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 97, "deletions": 93}}, {"node": {"oid": "41e405ad6fd3f69ca1d5e4b6be19338f9349379a", "messageHeadline": "Minor edits to text", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 6, "deletions": 6}}, {"node": {"oid": "133ce37083b769c044bb1a74358ab15631a38329", "messageHeadline": "minor changeS", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "044b43736bd7f0748c6bdaaaa0d99d83e96601ca", "messageHeadline": "fixed sentence", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 2}}, {"node": {"oid": "5db492ba0af75c0711d64ae2da7d8ece147e2154", "messageHeadline": "added Simone to authors", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 0}}, {"node": {"oid": "a9b2134e8327280fc8f308a89d5456afd6d91694", "messageHeadline": "Implimented review suggestions", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 9, "deletions": 13}}, {"node": {"oid": "6425c054b8748bd65e1dbb797423ec224fd17692", "messageHeadline": "Update examples/kelp.jl", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "fc15e25d587ca7a717e5f7153f0b5ed92827df5e", "messageHeadline": "Update src/Boundaries/Sediments/simple_multi_G.jl", "author": {"name": "Simone Silvestri", "email": "silvestri.simone0@gmail.com", "user": {"login": "simone-silvestri"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "76fed5cc9414f6141fc01fdb7466f27905eaeb58", "messageHeadline": "kernel `calculate_tendencies!` to `_calculate_tendencies!`", "author": {"name": "simone-silvestri", "email": "silvestri.simone0@gmail.com", "user": {"login": "simone-silvestri"}}, "additions": 4, "deletions": 4}}, {"node": {"oid": "35fd377500be18a23416df7e414d37ca40ef19bd", "messageHeadline": "bugfix", "author": {"name": "simone-silvestri", "email": "silvestri.simone0@gmail.com", "user": {"login": "simone-silvestri"}}, "additions": 94, "deletions": 90}}, {"node": {"oid": "f550432e6c338935c97ecea5c2a9eddced9a1c41", "messageHeadline": "Apply suggestions from code review", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 3, "deletions": 3}}, {"node": {"oid": "661e61561dfe89c5013a908cd210cf4e7e3ba7d8", "messageHeadline": "added bullet points", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 7, "deletions": 4}}, {"node": {"oid": "5947e659e0c2cd08038fd46cb52d879f8cc7cfbf", "messageHeadline": "removed repeated speed information", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 3}}, {"node": {"oid": "f41dfcdd489f530a34b0de545705a72de83f07da", "messageHeadline": "made package names consistent", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 14, "deletions": 14}}, {"node": {"oid": "604d8d799a125724aac3d81a073723b829a815ec", "messageHeadline": "Apply suggestions from code review", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 3, "deletions": 1}}, {"node": {"oid": "f28fac294a58a1ed2143c80351f53587fc4c9f0f", "messageHeadline": "Added Navid to author list", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 4, "deletions": 1}}, {"node": {"oid": "c789399b3b7a9d1bdfee85acddf21547c5499fa1", "messageHeadline": "Improved figure reference wording", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "b31d5407736e740628000246d260af237af4cdc8", "messageHeadline": "Apply suggestions from code review", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 5, "deletions": 5}}, {"node": {"oid": "07ade32588f31aca1df3181f7753db018f9f3b85", "messageHeadline": "added reference to figures", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 13, "deletions": 11}}, {"node": {"oid": "abb0ddc243022609c8fc77fa150ad80be2c7ebe7", "messageHeadline": "applied review suggesitons", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 16, "deletions": 5}}, {"node": {"oid": "65b394552fc78cf4899d805b778f5bf9dd48a9fd", "messageHeadline": "Used grammarly to catch some gramar mistakes", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 5, "deletions": 5}}, {"node": {"oid": "80930f9147d596e9b4841c5ce82bc235e0cfba17", "messageHeadline": "Update paper.md", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 0, "deletions": 3}}, {"node": {"oid": "b55e76e05bc8bb14c729833597e2b0c4afa9d912", "messageHeadline": "Update paper.md", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 4, "deletions": 1}}, {"node": {"oid": "f886a29d9df517e39980f829faa6efe824b7660a", "messageHeadline": "added line breaks to each sentence", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 46, "deletions": 10}}, {"node": {"oid": "ebbfff3daef9c43c55da6d7a134066360b769bec", "messageHeadline": "Update paper/paper.md", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 4, "deletions": 1}}, {"node": {"oid": "96eef8503c98b53fd20f193e4f7f3c050b602b93", "messageHeadline": "Bibliography mistakes", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 3, "deletions": 2}}, {"node": {"oid": "de291372108394b330e0dafbf6416391a8c52095", "messageHeadline": "Typos", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 7, "deletions": 7}}, {"node": {"oid": "d36fb94ce42d66bcf73c0bb7ea78b9bfb35251ab", "messageHeadline": "Oceananigans + author changes", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 7, "deletions": 2}}, {"node": {"oid": "e0140383247a055d6b145097d0ff138dd63af631", "messageHeadline": "Update paper.md", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "303c85c94f0e5e90e8031435a2fc40e3e20856f4", "messageHeadline": "Update paper.md", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 2, "deletions": 1}}, {"node": {"oid": "fa98849c78560d33725af94f7636d0474f55220b", "messageHeadline": "figure fixed!", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 5, "deletions": 5}}, {"node": {"oid": "135bffeac68581ce1b7ecf4f8fad2da05c28fc07", "messageHeadline": "corrected kelp density and plots", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 23, "deletions": 17}}, {"node": {"oid": "88322b15908389292182dcae219dd573ea78e2b4", "messageHeadline": "fixed typo in figure and added figure scripts", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 244, "deletions": 0}}, {"node": {"oid": "03ace76aabc7d1cbc8340423ddb098c39197282d", "messageHeadline": "Merge pull request #106 from OceanBioME/ncc/docs-svg", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 174, "deletions": 110}}, {"node": {"oid": "9301e61a9ee1331a396e933e8d7e1987b5c3f3b1", "messageHeadline": "removed horizontal diffusion", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 4, "deletions": 6}}, {"node": {"oid": "113ec2494fa3efc80e2fb1abcee2b0b7f830e75b", "messageHeadline": "cfl=0.6", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "d2d0b634147ad64a65300bff1152217fd3d74510", "messageHeadline": "reduce cfl and check every iteration", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "eb91fb18b13670237e8fa9147533ef84405bc185", "messageHeadline": "fix typo", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "1e5dd6fa0233db9a8b029cb311e344e7ce3bd5f6", "messageHeadline": "add remark about depths + unit conversion", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 40, "deletions": 19}}, {"node": {"oid": "01ca70c976169b257ed364155830c5dfc792b02a", "messageHeadline": "add back horizontal closure to heal numerical blowup", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 7, "deletions": 5}}, {"node": {"oid": "5987504109aac2c70c2a4eeee8bc860bbdac5530", "messageHeadline": "Merge branch 'main' into ncc/docs-svg", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 108, "deletions": 70}}, {"node": {"oid": "7ac0d4a3f901b705452504fb9a17a971e568a13a", "messageHeadline": "Merge pull request #107 from OceanBioME/ncc/fixes", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 108, "deletions": 70}}, {"node": {"oid": "8b082db671de2678d758ffaea425c08cf4a870e2", "messageHeadline": "empty line at end of file", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 4}}, {"node": {"oid": "8f816e85fffc61ac7277cfdb96ebf47a25b68245", "messageHeadline": "add test for column_diffusion_timescale", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 30, "deletions": 1}}, {"node": {"oid": "63cf63aee6cdce073258f9da2ef0d4cdc39515dd", "messageHeadline": "import znodes + proper inbounds", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 3, "deletions": 3}}, {"node": {"oid": "9d3f7eeac338a22830f19382efe77243f7f1fdda", "messageHeadline": "simpler", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 5, "deletions": 4}}, {"node": {"oid": "f13d578e76cd7fcd522bd6b0094b60ab35324c9f", "messageHeadline": "missing imports + z, \u0394z inside loop", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 3, "deletions": 5}}, {"node": {"oid": "472d4915220b36a967fc08d74817a6e5802fb1b6", "messageHeadline": "import Center", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "b5e5f830d7afa53f4b5f953ce316a0e368405fbf", "messageHeadline": "fix typo", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "ce6846359dbd6856cf265ac2a043f7bf5705cc24", "messageHeadline": "import minimum_zspacing", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "ca1e38317cbb716b07fa85bf27503b2f99a0e52f", "messageHeadline": "remove stray space", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "d3d5ba9fac4e61dae5f7c911f743c599ebad6f7f", "messageHeadline": "add missing inbounds", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 16, "deletions": 11}}, {"node": {"oid": "dfc026161b49873f87e7dc2c5c85e49dae8cc411", "messageHeadline": "avoid type instabilities + some code alignment", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 9, "deletions": 10}}, {"node": {"oid": "f12af35f24ab2272f0966a3f980d4cf0c8cb0a67", "messageHeadline": "add inbounds", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 27, "deletions": 22}}, {"node": {"oid": "416b58d1d84bf6978df426cde3af8d345079557b", "messageHeadline": "no return + fix typo", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 3}}, {"node": {"oid": "4f381a7318d00150173aa17c7b07a30045c95e6f", "messageHeadline": "fix", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 6, "deletions": 6}}, {"node": {"oid": "623dabb5a02d0e9ad93c4c7123b5f27c36f50c39", "messageHeadline": "fix", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 4, "deletions": 3}}, {"node": {"oid": "91730cd29e548acf1f49f0559fea50a8879bab03", "messageHeadline": "actually znodes is OK but add some missing inbounds", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 17, "deletions": 19}}, {"node": {"oid": "f94d08fd8f5689c31f20cf2db813b9d6e9e555fe", "messageHeadline": "use znode instead of znodes", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 17, "deletions": 10}}, {"node": {"oid": "ca3facdbe58ccfa872a9e3df0fc661ec44662884", "messageHeadline": "reduce allocations", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 12, "deletions": 13}}, {"node": {"oid": "0d124aae0da4e475e0dee56b29759ee541c77f5e", "messageHeadline": "add return nothing", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 0}}, {"node": {"oid": "2a7d43d108dd42986765a7392a45952b98abc061", "messageHeadline": "fix typo", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 4, "deletions": 4}}, {"node": {"oid": "edd35d5bbbcc5ad5bfac1d65a097bc447688d62e", "messageHeadline": "minor tweaks", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 3, "deletions": 3}}, {"node": {"oid": "d2ca346ae786adcc38291eb4ef7198054a662f74", "messageHeadline": "suppress showing some output", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 24, "deletions": 10}}, {"node": {"oid": "7728994b066f4bad4b6544f6931afc9b92ca38d3", "messageHeadline": "cfl=0.8", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "1a3bc65675fdbeaf8e8a5cdbeba6b4cb0e97d65c", "messageHeadline": "fix carbon_export pointing to air_sea_CO\u2082_flux", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 10, "deletions": 7}}, {"node": {"oid": "bf8cad7f5b0c180388ddbb2091f30aa0ddd4cc73", "messageHeadline": "add docs/Manifest", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 0}}, {"node": {"oid": "e7bd802d853c8e5118bb4510506f1b8f81b0a1c2", "messageHeadline": "don't enforce ylim", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 6, "deletions": 5}}, {"node": {"oid": "5d9691b6327c50e8a3693d0cc1e6c4665bc429a0", "messageHeadline": "remove pkg from docs project", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 0, "deletions": 1}}, {"node": {"oid": "d718739f971eb2b5655bfcc1d512bde79a8da24f", "messageHeadline": "add docs/visualization + convert figs to vector form (svg)", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 93, "deletions": 68}}, {"node": {"oid": "f3d1724e32b6e773d3dd1112d033e3d4b27b376b", "messageHeadline": "Merge pull request #102 from OceanBioME/ncc/some-more-fiddling", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 100, "deletions": 90}}, {"node": {"oid": "abbfe79e10f4ffc2dd85ca17e8bc2068e8f6098c", "messageHeadline": "Merge branch 'main' into ncc/some-more-fiddling", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 58, "deletions": 62}}, {"node": {"oid": "bedbbaffe154a813c5d2bd2d306c574d62b981f0", "messageHeadline": "Merge pull request #105 from OceanBioME/ncc/optimize", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 58, "deletions": 62}}, {"node": {"oid": "ec59091a8a6f2d2d46e9d10d178afbf9f4ba5997", "messageHeadline": "Merge branch 'main' into ncc/optimize", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 96, "deletions": 29}}, {"node": {"oid": "89ed8b97ff96f8d5dd7bc20371529cc51ce20aa5", "messageHeadline": "Merge branch 'main' into ncc/some-more-fiddling", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 96, "deletions": 29}}, {"node": {"oid": "e2a94de966fb668c6e120836f96427bd902f581d", "messageHeadline": "Merge pull request #103 from OceanBioME/ncc/readme-docs-badge", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 1}}, {"node": {"oid": "feddb7bb4754bbdb3c62712c22e7098c0b31074a", "messageHeadline": "Merge pull request #101 from OceanBioME/jsw/parameter-summary", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 94, "deletions": 28}}, {"node": {"oid": "f974da773963af3f2a4d87066e05a513cfc2b86b", "messageHeadline": "cleanup", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 7, "deletions": 7}}, {"node": {"oid": "633ccb0b95e6e5fb59871729420b68f3093bc881", "messageHeadline": "fix legend positioning", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "2371b5c40c7366cc9d1e1da327206827751e17c3", "messageHeadline": "minor cleanup", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 5, "deletions": 5}}, {"node": {"oid": "b38414645b5124ce9ca6864e845f0db71683a92c", "messageHeadline": "add missing CairoMakie", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 2, "deletions": 0}}, {"node": {"oid": "dbee98f575aaaa25b356adb6a6bed82ab6865929", "messageHeadline": "add missing inbounds", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 9, "deletions": 7}}, {"node": {"oid": "bdcbe46803c35fad5c90ee0e61522d1cf58c8541", "messageHeadline": "code alignment/cleanup", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 49, "deletions": 55}}, {"node": {"oid": "4778ee1c8d960fd6134cdb0aa32a7caba82691d2", "messageHeadline": "even simpler", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 54, "deletions": 52}}, {"node": {"oid": "3c523a4f6d7166759532d4765ca0ab37f55aeeaa", "messageHeadline": "fix docs stable badge url", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 2, "deletions": 1}}, {"node": {"oid": "4e82d286ebd1d71fc6a994461177feed7bbf1e1c", "messageHeadline": "some more simplifications/beautifications", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 45, "deletions": 37}}, {"node": {"oid": "b504d0cf63de41c6b867620f8d21aba79c7f1feb", "messageHeadline": "remove horizontal visc + fix x/y orientation", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 11, "deletions": 13}}, {"node": {"oid": "461724c43152dcf4a1290bc8f4c297df244b06bc", "messageHeadline": "change parameter page title", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "2964ad7c790d1652d93cdce7373f8ebda47bafe8", "messageHeadline": "removed old stuff", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 0, "deletions": 23}}, {"node": {"oid": "f3ca7b117776243cb3ef7c3d979718fae1e0fcbb", "messageHeadline": "removed old example, not sure how it's still here", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 0, "deletions": 162}}, {"node": {"oid": "702725f1eb3b10d8aff51fb533eb6379e4326dcc", "messageHeadline": "reset random src and benchmark changes to main", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 130, "deletions": 86}}, {"node": {"oid": "3f845a0b50017d9169f71851a54efcbbca0d5b88", "messageHeadline": "typo", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "6c6d43e9c66811230e3edadeae926d995d7acd83", "messageHeadline": "Merge remote-tracking branch 'origin/main' into joss-paper", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 890, "deletions": 2117}}, {"node": {"oid": "eb96b0ab0a78099030873a91688cee2781908cd0", "messageHeadline": "fixed main merge", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 3, "deletions": 10}}, {"node": {"oid": "1251097ed995f08d909673a5a486329db7d5e596", "messageHeadline": "added parameter index back", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 4, "deletions": 0}}, {"node": {"oid": "2309c69b0fd0bc11e829135d8187718a6fe7a37d", "messageHeadline": "Merge remote-tracking branch 'origin/main' into jsw/parameter-summary", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 366, "deletions": 343}}, {"node": {"oid": "3bd7faa31aeed8b6ebf98ad68f1e7b191b40c7a1", "messageHeadline": "added parameter display scripts", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 99, "deletions": 37}}, {"node": {"oid": "888a107a6a95eb8531a72a958934cfbea4982081", "messageHeadline": "Merge pull request #100 from OceanBioME/ncc/readme-example", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 373, "deletions": 357}}, {"node": {"oid": "430fe35ea426a0d8d8b3d554f93dfe303ed735a0", "messageHeadline": "remove nothing #hide", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 0, "deletions": 19}}, {"node": {"oid": "c6720febe621a1f5a07cfccdf0a388593468e4a8", "messageHeadline": "nothing #hide -> nothing #src", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 19, "deletions": 20}}, {"node": {"oid": "5846047971f43085e048da7147eca28ed066295b", "messageHeadline": "no current_figure() + code alignment/beautifications", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 16, "deletions": 20}}, {"node": {"oid": "58e3b2d7e6ef6445529f8384845df0b055fe51c5", "messageHeadline": "execute with Literate", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 7, "deletions": 4}}, {"node": {"oid": "b8feac4da123aa514a100609c9ba15f9b2cc4278", "messageHeadline": "Update paper.md", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 6, "deletions": 5}}, {"node": {"oid": "f52f3ed3f0b52a0b31f85ff18e6e73067a55a390", "messageHeadline": "no execute, no debug", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 4, "deletions": 6}}, {"node": {"oid": "112673fd66a31c89e79317c4d2ad12dda338faf4", "messageHeadline": "add x/y labels", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 7, "deletions": 5}}, {"node": {"oid": "2b58f0846758c9f242b441e4c7a86a85c67596fa", "messageHeadline": "don't execute=true", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 0, "deletions": 1}}, {"node": {"oid": "9aa9625ad1d995785704c90d01b707958ef27b30", "messageHeadline": "some beautifications", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 30, "deletions": 12}}, {"node": {"oid": "71cc85e5a4d8c169b504a1e25d342c7f866701e4", "messageHeadline": "new animation", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 3, "deletions": 3}}, {"node": {"oid": "7d0b156296abb82009157e190bd56c3325f17b58", "messageHeadline": "some simplifications", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 5, "deletions": 5}}, {"node": {"oid": "314aef5fe43f80429bcb902ef1306f35291e5d58", "messageHeadline": "some simplifications", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 16, "deletions": 17}}, {"node": {"oid": "c03ccb151818fd606fa18b4a35a4a8493a2c9e92", "messageHeadline": "lower limit -85", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 5, "deletions": 5}}, {"node": {"oid": "cfee89bb1171cfb616b3885bf083ee18f70b03b5", "messageHeadline": "lower limit -85", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "e750d46e924cbf0b0553caa812b515f48b54db6b", "messageHeadline": "some simplifications", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 3, "deletions": 2}}, {"node": {"oid": "0da1df04d5b7f6b570b4648e3229f9992d34be4d", "messageHeadline": "some simplifications", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 27, "deletions": 24}}, {"node": {"oid": "03799e58e53931c495a9ff3a5e772ebb840200fc", "messageHeadline": "some simplifications", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 32, "deletions": 26}}, {"node": {"oid": "0a3276da41a9bab0a624af4f8279afca4f7b011f", "messageHeadline": "don't compute divergence", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 8, "deletions": 10}}, {"node": {"oid": "0846bdaa23498aaeabbe7332cbec019be07c1814", "messageHeadline": "better visualization for column example", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 24, "deletions": 25}}, {"node": {"oid": "bd9a5c1b2d33edad4abca597a55d0b17345ad090", "messageHeadline": "typo + minor formatting", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 3, "deletions": 4}}, {"node": {"oid": "d5fa82e52fb3f818b27e44073f716c580d98ba10", "messageHeadline": "gif -> mp4 since it's much smaller size", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 6, "deletions": 6}}, {"node": {"oid": "b5528c58821b75955ec828e2430281b383966652", "messageHeadline": "Merge branch 'ncc/readme-example' of github.com:OceanBioME/OceanBioME\u2026", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 5, "deletions": 1}}, {"node": {"oid": "2396eaad2c832ae0ac6cb9d9c78ae06ed1550550", "messageHeadline": "simplify plotting", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 27, "deletions": 34}}, {"node": {"oid": "7a36b5e23adc23ba457255c1c3fe333c8ca8d845", "messageHeadline": "Merge branch 'main' into ncc/readme-example", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 5, "deletions": 1}}, {"node": {"oid": "bddeb0f809c9832d6a4def50d3a838d53f94e114", "messageHeadline": "simplify example scripts", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 37, "deletions": 30}}, {"node": {"oid": "b63778e7cb772ee951358e65a24f9a4d79768abf", "messageHeadline": "simpler plotting", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 27, "deletions": 26}}, {"node": {"oid": "9fdce9f9c3f06ae460643b69f8cf179ab70e22a1", "messageHeadline": "Update tests.yml", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 5, "deletions": 1}}, {"node": {"oid": "092e9ec9a2c8d906212a204ac77f7c06937e0fa2", "messageHeadline": "Merge branch 'ncc/readme-example' of github.com:OceanBioME/OceanBioME\u2026", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 6, "deletions": 2}}, {"node": {"oid": "f44ea2076b8d32cb6679c6de1db9ce6d8f8e3427", "messageHeadline": "some cleanup in examples", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 65, "deletions": 61}}, {"node": {"oid": "5c388ccf9e05653247b8f20746d42c6c4d8c393c", "messageHeadline": "legible code formatting", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 20, "deletions": 5}}, {"node": {"oid": "cc1091fca5abe7966a9063700acb9a6f23f29404", "messageHeadline": "Merge branch 'main' into ncc/readme-example", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 6, "deletions": 2}}, {"node": {"oid": "ecd6be24ab59e9ea7b29c0e4452a19fad4451997", "messageHeadline": "fix typo", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "03fd076b4d32d23b9fe9ed6a918661806cf5918d", "messageHeadline": "bring back examples", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 5, "deletions": 5}}, {"node": {"oid": "3a40b26a0b7c1ab6e5472220e830de223f353fdc", "messageHeadline": "Update documentation.yml", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 4, "deletions": 4}}, {"node": {"oid": "996bcb9350538221390a81ac43fe405f7cb0f35d", "messageHeadline": "code formatting", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 18, "deletions": 17}}, {"node": {"oid": "e19f42044ddb88cc3a34ce0bee150c4ba2af7a03", "messageHeadline": "fix typo", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "20e530f78a82e1b43db86d8a0e68c8f3eb5543de", "messageHeadline": "comment out examples", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 5, "deletions": 5}}, {"node": {"oid": "8f4a06b7babbe54154c3a03dde48108b63145104", "messageHeadline": "attempt to remove duplicate ref entries", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 4, "deletions": 4}}, {"node": {"oid": "d030c9b60970ffe4eeaaf922ac4465928a7d551c", "messageHeadline": "bring back examples", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 13, "deletions": 21}}, {"node": {"oid": "24e9771b9c4d376e3fbbcac1de3d08a39d042867", "messageHeadline": "Update documentation.yml", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 6, "deletions": 2}}, {"node": {"oid": "8ce6e32da8df00f89aeca47c44f8f42519fb28f8", "messageHeadline": "minor modifications", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 10, "deletions": 8}}, {"node": {"oid": "676226d38f335694fff1e8d69b06626bc8ae96dd", "messageHeadline": "no svg", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 0, "deletions": 3}}, {"node": {"oid": "6664d613f134fbbb5395d29b6a141efdb48ab2f6", "messageHeadline": "nuke doctest setup", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 2, "deletions": 7}}, {"node": {"oid": "9fb77734da2b675e30b17c2e76efefc929145ff9", "messageHeadline": "1 empty line", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 0, "deletions": 1}}, {"node": {"oid": "66a968f56b55d2b01fa872c161603bcd646ccbbb", "messageHeadline": "add example title to use namespace", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 6, "deletions": 6}}, {"node": {"oid": "730aa1feb6db54803a9cf95d8fdc4ab05e8a0465", "messageHeadline": "remove broken code", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 5, "deletions": 10}}, {"node": {"oid": "c320f3e94da0c0b1daed7a4db12722eed5b76b95", "messageHeadline": "strict=true", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "7259251cc89d1ed85cd51329336583d91d1b326f", "messageHeadline": "beautifications", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 7, "deletions": 6}}, {"node": {"oid": "323cd4416861f0636229a982e27856952bf43915", "messageHeadline": "try once without examples", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 16, "deletions": 12}}, {"node": {"oid": "13740518fdfb9ea16c213be09b8251d5e21e14df", "messageHeadline": "let the docs run the example", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 6, "deletions": 10}}, {"node": {"oid": "9fe2c3d5a6b0273d2315e9017fab1142a9609f7c", "messageHeadline": "fix latex rendering", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "9926059ad343284e35657e774ebe970eeb1d0cfd", "messageHeadline": "beautifications", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 4, "deletions": 0}}, {"node": {"oid": "f2e520973ee31261f37fa3204b1fe0a5ae3e2f4f", "messageHeadline": "bring examples back", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 10, "deletions": 10}}, {"node": {"oid": "c8d234f8f81c7a6b777a5a3e4e888eec83c071a9", "messageHeadline": "code alignment", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 10, "deletions": 10}}, {"node": {"oid": "816630d5bb0c945a9b4da81ebb9beb37e072d104", "messageHeadline": "code alignment", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 4, "deletions": 4}}, {"node": {"oid": "643b74c60bfe02ee83a17361e5e101ae4c8c32bd", "messageHeadline": "include required imports in demo", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 9, "deletions": 9}}, {"node": {"oid": "fdb760aea2a1145eb22ecc22243e6c9e3e2558bf", "messageHeadline": "no need to avoid doctests", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 3, "deletions": 5}}, {"node": {"oid": "a7e4113af4f5c1f300ef02f80ff315d71f7f4c91", "messageHeadline": "convert doctest to example", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 3, "deletions": 12}}, {"node": {"oid": "87e5ade48c9eba5714116884d040bb6796214b62", "messageHeadline": "convert doctests to examples", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 10, "deletions": 7}}, {"node": {"oid": "2e11716b7547e5e0a7b9e5e1425e5d62ffbdd850", "messageHeadline": "minor rephrase", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "fbe24510e3e12540c22d8d8f1a0a9bc18d5c3906", "messageHeadline": "add empty line at end", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "a6368b63c8a148ddb8f8407ca2e06c22b3c3c366", "messageHeadline": "Update paper.md", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 8, "deletions": 7}}, {"node": {"oid": "1bd0003d7b25fc3233e91667626cee74017c9a17", "messageHeadline": "simpler quick_start example", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 12, "deletions": 7}}, {"node": {"oid": "d1660651c5aa85c67c200197e1b4a1c6fbac8c77", "messageHeadline": "fix typo", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "e26f42169c7b91d54c799f94d9e6bc948a938461", "messageHeadline": "cleaner visualization for example", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 34, "deletions": 22}}, {"node": {"oid": "b359f874ee4c32a5337b2fa2a6b567a6ffe97aec", "messageHeadline": "Update paper.md", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 3, "deletions": 3}}, {"node": {"oid": "536459fe932f326617bce21aa0124b101592d48e", "messageHeadline": "Merge pull request #94 from OceanBioME/ncc/delete-docs-output", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 22, "deletions": 6}}, {"node": {"oid": "58820804b60ca1b576e76a178b2f58cac23537f7", "messageHeadline": "drop Glob", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "e994432ea8050bc7f40aee546714b03fa2528884", "messageHeadline": "another try", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 5, "deletions": 4}}, {"node": {"oid": "6868abb75e7b8652fcb1879adab142dfe693eb7d", "messageHeadline": "Merge branch 'main' into ncc/delete-docs-output", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 0, "deletions": 10}}, {"node": {"oid": "1c5598ec482c97f92008250d6071c3d491a3e5c1", "messageHeadline": "Merge pull request #97 from OceanBioME/jsw/test-on-all-prs", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 0, "deletions": 10}}, {"node": {"oid": "632a4757c820ecfc19905063e5700430de035dfe", "messageHeadline": "removed path restrictions on tests running since its free", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 0, "deletions": 10}}, {"node": {"oid": "9fc8a06f2272fe0d757ae1f05f3e2e9204e585cc", "messageHeadline": "Merge branch 'main' into ncc/delete-docs-output", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 4, "deletions": 1415}}, {"node": {"oid": "30c73f905feb57cc60b62395769f0c1ea08b2264", "messageHeadline": "Merge pull request #96 from OceanBioME/ncc/delete-docs-manifest", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 3, "deletions": 9}}, {"node": {"oid": "ab8d2eeb1e8d9936673d95f3c44caecc679000aa", "messageHeadline": "update manifest", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1406, "deletions": 1}}, {"node": {"oid": "f1d9e8d315cbf91d3dd0de577b5d6492a775f48d", "messageHeadline": "Update make.jl", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 2, "deletions": 1}}, {"node": {"oid": "4de323f825ca57637e0c3e11cec34bb7b97a7515", "messageHeadline": "use --color=yes", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "5fc56ff1eb2851c9efc28cac026392c3934b58f6", "messageHeadline": "add Oceananigans in docs/Project", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 2, "deletions": 0}}, {"node": {"oid": "4d695c4e5dd40665842e5ec6f5bae762cd8c3602", "messageHeadline": "no need to push path", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 0, "deletions": 2}}, {"node": {"oid": "e486f064455d5c510c491540b0a872d3de5dac56", "messageHeadline": "drop Glob", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 2, "deletions": 3}}, {"node": {"oid": "af0775070d5f8c1a3ae235f1f1da4bf7afb80205", "messageHeadline": "search recursively within `docs` dir", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 17, "deletions": 1}}, {"node": {"oid": "d285bea49b462567378e5c42a6bff82ab872783f", "messageHeadline": "Update make.jl", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 2}}, {"node": {"oid": "ebf8d55ce28b2177fa7b0a27d92cc179a84b2853", "messageHeadline": "add JULIA_DEBUG=Documenter env variable", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "1bff2a699c7ea77916be83d138b6d3055adc8709", "messageHeadline": "Delete Manifest.toml", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 0, "deletions": 6}}, {"node": {"oid": "791f0dcd3d9a6bab908258fd1b2fb1bc6235696b", "messageHeadline": "Ensure that all `.jld2`/`.nc` files are deleted before docs deployment", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "505914e9d49ac177062ad25e5205805dcd9bba1d", "messageHeadline": "Merge pull request #91 from OceanBioME/ncc/doc-preview-cleanup", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 26, "deletions": 0}}, {"node": {"oid": "c9053248731e785864dc7656ea45248bc4333b73", "messageHeadline": "Merge branch 'main' into ncc/doc-preview-cleanup", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 98, "deletions": 2041}}, {"node": {"oid": "7f1bfb0ba62e70aa9f05dfaa72c9100a1f2cb8a2", "messageHeadline": "Merge pull request #93 from OceanBioME/ncc/docs-rendering", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 96, "deletions": 99}}, {"node": {"oid": "b7b3d6e1a32917b60773d99125f9bec162147c32", "messageHeadline": "Merge branch 'main' into ncc/docs-rendering", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 1942}}, {"node": {"oid": "bc46747969c75fc26863d9b897616e7a9568d422", "messageHeadline": "Merge pull request #92 from OceanBioME/ncc/docs-manifest", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 1942}}, {"node": {"oid": "105d55a19467ca2cf0aced7402855d10ee7f2d03", "messageHeadline": "fix docstring rendering", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 3, "deletions": 3}}, {"node": {"oid": "eebd445c8e4c7157f6fb3a84a3b62dd157a9db73", "messageHeadline": "better link to doi", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 4, "deletions": 4}}, {"node": {"oid": "cd9e6e968b46c89c5bf49c491677fe8dea6cfffb", "messageHeadline": "better link to doi", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 5, "deletions": 9}}, {"node": {"oid": "c47ca1aaa41482c017aed451cd8ea9ab8d315897", "messageHeadline": "some enhancements in examples", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 28, "deletions": 27}}, {"node": {"oid": "ebc575d85cde859116b0fa42c1409de90332d469", "messageHeadline": "fix docstring rendering", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 47, "deletions": 47}}, {"node": {"oid": "a6da8fd665bdfcf049a5a88edb102b4746175ec8", "messageHeadline": "minor tweaks in Eady example", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 8, "deletions": 8}}, {"node": {"oid": "9ead0e28af349d525926178e18d0c0818b78d910", "messageHeadline": "fix latex rendering", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "d24be532f2c787bfd18d0c3139fe929e3bf848ea", "messageHeadline": "since docs are built using Pkg.develop the docs/manifest is not needed", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 6, "deletions": 0}}, {"node": {"oid": "a49113b84f7fe3b9bb44d54b1350bde0a1f2703e", "messageHeadline": "the package itself should not be part of docs/Projedct", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 0, "deletions": 1946}}, {"node": {"oid": "38f6c372039f87383c67378fafb4ecea81928365", "messageHeadline": "adds documenter previews cleanup gh action", "author": {"name": "Navid C. Constantinou", "email": "navidcy@users.noreply.github.com", "user": {"login": "navidcy"}}, "additions": 26, "deletions": 0}}, {"node": {"oid": "3378d6df3b2d463a4b4a5d8a3ec0c073525fbde5", "messageHeadline": "fixed version number and removed `UpdateJulia` dependency", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 20}}, {"node": {"oid": "ed30744a791a110810b8e72cdcda2ae8f18375b2", "messageHeadline": "Update TagBot.yml", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 19, "deletions": 1}}, {"node": {"oid": "22bf8dceea950c54d18e90db49de9656297ca279", "messageHeadline": "Merge pull request #89 from OceanBioME/jsw/update-dependencies", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 156, "deletions": 145}}, {"node": {"oid": "1d019a01d55ec8b063dbddd42e663393d9fd6714", "messageHeadline": "bump version (not breaking)", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "117ba80f9871b8d0757097ad3f6d4c6b44a35c37", "messageHeadline": "updated examples", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 35, "deletions": 18}}, {"node": {"oid": "a4f884712c30c8317119c4a14ffd2e565451a735", "messageHeadline": "updated Oceananigans version (examples to come)", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 120, "deletions": 126}}, {"node": {"oid": "da416c53e4e763eb08f5ca1b2a7067f91d969fe7", "messageHeadline": "Update paper.bib", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "7555c862c3a59d0d47c6475dc129d918523b586c", "messageHeadline": "Update paper.md", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 8, "deletions": 8}}, {"node": {"oid": "dc4c332fe44488d4279df6ba6f3c633d42467fdb", "messageHeadline": "Merge pull request #88 from OceanBioME/jsw/npzd-gpu-support", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 653, "deletions": 48}}, {"node": {"oid": "ac587802fa804371b2804e224f792490a20898d9", "messageHeadline": "maybe fixed docs", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 532, "deletions": 1}}, {"node": {"oid": "0a57fdbdcf1ae46087de3407ae2a25c983bc6982", "messageHeadline": "typo", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "97d139e5633b2fa4d3d165612f948448b3142674", "messageHeadline": "show velocities bug", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 3, "deletions": 3}}, {"node": {"oid": "8c482c36c50ec5e285eea578ab68dcd53d5ffc83", "messageHeadline": "bump version (not breaking)", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "f31691a0c0d4c5f59c6d48e151e7cd4c3dadb6b2", "messageHeadline": "added `adapt_structure` method for NPZD", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 117, "deletions": 43}}, {"node": {"oid": "a5b3b6f0a225e5af2a2575618fca77194f63c337", "messageHeadline": "Merge remote-tracking branch 'origin/joss-paper' into joss-paper", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "a216d7feb49717d1adbf3288ece0859a00cf0508", "messageHeadline": "tidied up", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 0, "deletions": 20}}, {"node": {"oid": "f9ea0e3a5104ed06cc06d82584e23ae6832c6e7a", "messageHeadline": "Bump version number", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "b6df01e6e099b4a8b2f6833a24f2f099acf0a6a3", "messageHeadline": "Merge pull request #84 from OceanBioME/jsw/bump-oceananigans-version", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 74, "deletions": 74}}, {"node": {"oid": "3563f2ff0b7f15adb720f450ff3bf6020f2db47e", "messageHeadline": "seems to work now", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "9bf53c144fcba05451e22c62abfcfb03302d7b5f", "messageHeadline": "why not run now?", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "d2ed1a6d3f809ae3d2aef3573d06bafb9af1d0e1", "messageHeadline": "fixed sediments", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "b5cd3e7ab50b28889a74231a6cf2d24c15631787", "messageHeadline": "fixed timestep adaptor", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "df31da5ea467666758bbf6c615c8d293694757c7", "messageHeadline": "changed `x/y/znodes` use", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 13, "deletions": 14}}, {"node": {"oid": "d9cbca3c892203f4a6939956bd6ab023458af067", "messageHeadline": "updated use of `xnode`", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "063c3341f8bd51b6a301d7d52896b414d3c56ba8", "messageHeadline": "fix breaking changes", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 55, "deletions": 54}}, {"node": {"oid": "25484b546edda3752c3519aae2b441b1e57b2f52", "messageHeadline": "Update Oceananigans compatability", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "e7bffc0b03a10d0b0769fe5c805c032f68ec89ef", "messageHeadline": "edits to OceanBioME description", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "70ff47f3326cbe668eb92fdf0f6222a1ae96cdd2", "messageHeadline": "removed tags", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 3, "deletions": 5}}, {"node": {"oid": "23fcc06454869d314367ddc97d83ee2c1f54047e", "messageHeadline": "Merge pull request #82 from OceanBioME/more-docs", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 10, "deletions": 1}}, {"node": {"oid": "4ee2dce9fc4f7a49ce6e72d4fc2c6b082194ef6e", "messageHeadline": "regex'ed incase we edit examples", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 19}}, {"node": {"oid": "98870cfdb1d4533f41ec72cc918fb2cfb9602611", "messageHeadline": "seems ot be getting there", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 4, "deletions": 1}}, {"node": {"oid": "a3a57248208a1d89e52a3cd53a9fa5fdb845a796", "messageHeadline": "remove new line", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 8, "deletions": 4}}, {"node": {"oid": "48f84dee3b9c530e2429a473dd0bf267f05f1762", "messageHeadline": "another warning", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 0}}, {"node": {"oid": "36417732c6ed8d56f2947eed3a6453d808d754ad", "messageHeadline": "a bit bigger 3", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 0, "deletions": 0}}, {"node": {"oid": "b1163039c44252f1dd8366ba7f6b4bf6425ac60f", "messageHeadline": "a bit bigger", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 0, "deletions": 0}}, {"node": {"oid": "ae8fc7b6235fe95ffb1a0f7e8906e4817091f165", "messageHeadline": "a bit bigger", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 0, "deletions": 0}}, {"node": {"oid": "0c8a21216cd40f255649a299ba3829a2ab097b13", "messageHeadline": "typo", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "0a0e3fade83d81b780222e8cffe34f7cbbf2d5fd", "messageHeadline": "Slightly bigger font for eady (may still be too small)", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 0, "deletions": 0}}, {"node": {"oid": "95164b2f1c5400dfb347680d7ba10817871744dd", "messageHeadline": "postprocess the silly errors out", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 19, "deletions": 1}}, {"node": {"oid": "a49f1be258b19da6b61b7bb99c9d41578830fd2e", "messageHeadline": "Merge pull request #79 from OceanBioME/more-docs", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 74, "deletions": 22}}, {"node": {"oid": "f314bbc0c34aaabf6954febfdcc8892f4e37893b", "messageHeadline": "Merge remote-tracking branch 'origin/main' into more-docs", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 10, "deletions": 7}}, {"node": {"oid": "806e669055baeb72644d7f329d12a5f61ddf4ef9", "messageHeadline": "fixed Manifest (?)", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 0, "deletions": 44}}, {"node": {"oid": "25d7c413712e438d628575e11d527457ce799287", "messageHeadline": "tidied fig2 caption", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "25a4f7b8e969a3a4997cfa5e5689e0926b6bfee5", "messageHeadline": "tidied fig1 caption", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "85eba986cb97ab3406ea3b194906151ad69f5579", "messageHeadline": "Taller and less text", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 0, "deletions": 0}}, {"node": {"oid": "e69df03b10bda032b5cf012c0ccb7cd9b648a1b1", "messageHeadline": "narrower version of column fig but with C storage", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 0, "deletions": 0}}, {"node": {"oid": "99e7316a256f60038c280c61511ba1f9f267650f", "messageHeadline": "narrower version of column fig", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 0, "deletions": 0}}, {"node": {"oid": "3b4c54a7b62e70244e026c723a758c062156b643", "messageHeadline": "Edited description of OceanBioME", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 5, "deletions": 5}}, {"node": {"oid": "7de9cb2b4eea31c6f0963f999c84fecd57332da9", "messageHeadline": "Update kelp.jl", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 2, "deletions": 1}}, {"node": {"oid": "25d3f1c73cc50e555576eb3be4094120c34c0684", "messageHeadline": "removed timestep wizard from kelp and column examples as it doesn't d\u2026", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 10}}, {"node": {"oid": "531e8fd3833ac0ccbea1a6f84d506e0a369bdd93", "messageHeadline": "Merge remote-tracking branch 'origin/main' into joss-paper", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1931, "deletions": 1610}}, {"node": {"oid": "4862ce74134d5e76d3ec0f2ccfb8b228d699693b", "messageHeadline": "Greg -> Gregory", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 3, "deletions": 3}}, {"node": {"oid": "9de64f912baf759d47b1929308f6f0e8676d8936", "messageHeadline": "update kelp example", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 0, "deletions": 5}}, {"node": {"oid": "3b0bacb27cbf1e814bd77aee1ec4adf7d3817cdf", "messageHeadline": "trying another strategy (fixed)", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "cfe84140c969de15a9eaab2fc4b41bf19a8bd8b0", "messageHeadline": "trying another strategy", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 0}}, {"node": {"oid": "52a8996f12d4b2f983f3e93e490c677fb3d1e3a5", "messageHeadline": "removed stderr redirect from examples as doesn't solve the issue", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 0, "deletions": 9}}, {"node": {"oid": "0bacd5571d966a0f399937e35537c2f3e70285d7", "messageHeadline": "Merge remote-tracking branch 'origin/main' into more-docs", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 31, "deletions": 31}}, {"node": {"oid": "54c0f28a5f98e62ee63696ad31b5085cc71b5f00", "messageHeadline": "fixed kelp example", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 1}}, {"node": {"oid": "e127bec0bc4828a5ec686e03ce7e52106f8d680b", "messageHeadline": "Update index.md", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "b897c702a9fc471e8d162c55b1cd14da6da85a4f", "messageHeadline": "Update README.md", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "5736695faa70a4722b0ed6a2ed946155a7252573", "messageHeadline": "Update eady.jl", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 5, "deletions": 5}}, {"node": {"oid": "86682faf5e7e3466b651e6de645eb78a34e814a9", "messageHeadline": "Update data_forced.jl", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 3, "deletions": 3}}, {"node": {"oid": "c36efc85c4ecc6add58beb15ae2905215966d9bf", "messageHeadline": "Update convergence.jl", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 3, "deletions": 3}}, {"node": {"oid": "bd9c7274cf97169954a40a287fd3143637dbe9d0", "messageHeadline": "Update column.jl", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 3, "deletions": 3}}, {"node": {"oid": "14ad66b263088509bbd2e9977f07789a3ee807e9", "messageHeadline": "Update box_npzd.jl", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "a4e96a7833e98c69398e84b6953c7414e80d4ec7", "messageHeadline": "Update README.md", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 4, "deletions": 4}}, {"node": {"oid": "0426420f6ac2ba336dfb2590a2bd947047b40f97", "messageHeadline": "Update NPZD.jl", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 4, "deletions": 4}}, {"node": {"oid": "0b07a0bb09bf2aeef45af00207467060a8067581", "messageHeadline": "Update kelp.jl", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 6, "deletions": 6}}, {"node": {"oid": "dc5504f51cd9fef350dca55661631a53902ee792", "messageHeadline": "hopefully fixed weird `run!` warnings when examples compile", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 13, "deletions": 4}}, {"node": {"oid": "48f37d0a0f9ed3d4715c54590126d63a2ae22167", "messageHeadline": "docs title styling", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "3a0d4b495acead0d58ec14ecc218f6fa863798bc", "messageHeadline": "updated install in docs", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 67, "deletions": 12}}, {"node": {"oid": "5b92ed9bcff0f73029c0a6111b7fe975405696b7", "messageHeadline": "fixed Manifest (?)", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 25, "deletions": 25}}, {"node": {"oid": "b54fb906845ed990975ff58215587257d0c8f3f8", "messageHeadline": "Added gif to readme", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 0}}, {"node": {"oid": "20a048bd1bb2ab8562d25ab0f3af13a1dbcffd18", "messageHeadline": "Updated README for release", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 78, "deletions": 7}}, {"node": {"oid": "87c71439cf8430dcc0a61c66ff85514a51af5f1c", "messageHeadline": "accidental changes from another branch", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 100, "deletions": 115}}, {"node": {"oid": "b51f1a3038be7d4ab7fcd1b13639f0597d2ba0ac", "messageHeadline": "spelling", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 3, "deletions": 3}}, {"node": {"oid": "67d58a08c57aeba0c096f92ae0f8d0829ee75ee2", "messageHeadline": "fixed NEMO citation", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "775f3244987cc9ef48ee153d694c567874ad9be9", "messageHeadline": "changed intro", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 4, "deletions": 2}}, {"node": {"oid": "bf4e8608db8477ac6eb6f316acf2bc1ef75293c3", "messageHeadline": "fixed NEMO citation", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "0c12fcf07e4b6b972500f0208b3c701021ceb42d", "messageHeadline": "fixed NEMO citation", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 10, "deletions": 9}}, {"node": {"oid": "fc1c04f63dd353ca1502ef719031f265d7aa66a0", "messageHeadline": "fixed NEMO citation", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "165b0fa339c86fdb231896593e87aad63f928bb9", "messageHeadline": "fixed citations again", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "c2094b915ed4e26e291428c8018f2e579d07831f", "messageHeadline": "fixed citations again", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "f25d9ea9954f4f99dcdbfea349049e166db34bcb", "messageHeadline": "edited acknowlegements", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "d9747a9b03c7c3918a510270d6b01108b1ab7276", "messageHeadline": "fixed citations", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 36, "deletions": 8}}, {"node": {"oid": "b8330967f18d01cdfe2eeb1ea65825971cb45c30", "messageHeadline": "fixed captions", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 7, "deletions": 7}}, {"node": {"oid": "6875ae4ee74832071e4efe3608df302ecae874f3", "messageHeadline": "fixed bibliography", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "a2ce26210709ee1bbb7398a992ae4ceade1e7439", "messageHeadline": "added joss pdf compiler workflow", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 23, "deletions": 0}}, {"node": {"oid": "146ad68c513d1ab454e81f8589d2a8a06fa83f56", "messageHeadline": "fixed tagbot workflow (?)", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 19}}, {"node": {"oid": "b7727e644302d2fbee1a4dd89b9d21306a383e71", "messageHeadline": "added license", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 21, "deletions": 0}}, {"node": {"oid": "edc076e8f5fc895018acfcb4b23f7cf4d2d01ec6", "messageHeadline": "added rest of missing compats", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 3, "deletions": 0}}, {"node": {"oid": "daa7d3448a3c5818689318f1059374b19e60b1b7", "messageHeadline": "Added julia version compat", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 0}}, {"node": {"oid": "f0dbf316e101c64904dcd0098904792668d5d016", "messageHeadline": "added tagbot", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 33, "deletions": 0}}, {"node": {"oid": "be032056a367d2b659c48a382d70f3f57d49a119", "messageHeadline": "reset verison number for Pkg release", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "ac25bd4877ec8653e725ffdbc69f38939c6755fd", "messageHeadline": "Fixed dependencies and documentation", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1773, "deletions": 1591}}, {"node": {"oid": "9b3f98323c6b552da2a1283849b28af1a7eba2cf", "messageHeadline": "typo in particles", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 25, "deletions": 26}}, {"node": {"oid": "afaf439314915cf094313f88a0aa4c2d0eeb1456", "messageHeadline": "and Statistics", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "2ebf0d5819b8c9c2c178c7ad7902c3f559bdd765", "messageHeadline": "and Statistics", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "fc19d96618ff96df22dc6474ff9a29b27205c706", "messageHeadline": "typo", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "05a19d7bb88c2bfc167592f97e6e2b683a4e79fc", "messageHeadline": "need DataDeps for tests too", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "1643c7a1d9f9feba5c3c87e65ccd8595d5419343", "messageHeadline": "added example dependencies for docs", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 12, "deletions": 2}}, {"node": {"oid": "b9f08ddd69ee1ff80f8e6a5ef1ad4e0c4e04762e", "messageHeadline": "added some readme badges", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 3, "deletions": 0}}, {"node": {"oid": "d69b4f5a25c4c0c9183497ab90eb2953d31221ba", "messageHeadline": "Roots sometimes seems to fail (?)", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "e08e638357758881f585130841a62b889b2c2829", "messageHeadline": "particles seems to be broken locally but not remotely?", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "10266772ace167e3d355f1bde137eade8ab12c6c", "messageHeadline": "Added examples back in", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 4, "deletions": 5}}, {"node": {"oid": "dbea8dfb166dbb1d137637db50f2ef128e0032a0", "messageHeadline": "attempted to fix workflow again", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "13c75d3236dc2ed6b404c22e06bc9a1a470bf026", "messageHeadline": "updated some docstrings", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 259, "deletions": 60}}, {"node": {"oid": "d721de4f41f2107a5a1b6c8643cc02181cdbb728", "messageHeadline": "fixed workflow", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "f1b649fc8c7456498da6b214676f0f2e50e93248", "messageHeadline": "moved docs dependencies", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1424, "deletions": 5}}, {"node": {"oid": "96d081528967ea8756bbb839c3cacdadc639c0f9", "messageHeadline": "some fig caption changes", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 4, "deletions": 4}}, {"node": {"oid": "8af57d9bcd1cadd92420769c9e94658d63a43b63", "messageHeadline": "updated slatissima model docs", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 0, "deletions": 11}}, {"node": {"oid": "7965cf731ec60250e7c425c8e066e7da666eaa14", "messageHeadline": "fixed dependencies", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 58, "deletions": 1494}}, {"node": {"oid": "3582a8ad75bdf907ef0df9f234fb408f9f09b3ff", "messageHeadline": "edited paragraph about particles to reflect recent changes", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "429cca698c356b36a6d54cffba1ef7f9ebe3a1d6", "messageHeadline": "force added figures", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 0, "deletions": 0}}, {"node": {"oid": "00bb2e6529edd765ef9629769e28e26cb34cf5e8", "messageHeadline": "Merge remote-tracking branch 'origin/main' into joss-paper", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2707, "deletions": 2311}}, {"node": {"oid": "fb8dee50861150f6d0b3ef1c754be4545c032430", "messageHeadline": "added some figures and an 'ongoing research projects' paragraph", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 14, "deletions": 7}}, {"node": {"oid": "4d951ceb23a88315859d6d1c071ff8c2407da2d6", "messageHeadline": "Overhauled particles API", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1062, "deletions": 1184}}, {"node": {"oid": "7ab12a1129c18b96a89a657b15de18cd8bb85253", "messageHeadline": "added license", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 21, "deletions": 0}}, {"node": {"oid": "cfde7a58f00b4c206977f055b5774d85d257c7d1", "messageHeadline": "Merge remote-tracking branch 'origin/gpu-slatissima' into gpu-slatissima", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "bf45a9540137e2c11092a86b1e033f1692fa0adb", "messageHeadline": "fixed eady example dependencies", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "21992fe697a15d44bc24e431fe37778f7822ec5d", "messageHeadline": "fixed for", "author": {"name": "jagoosw", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "bff2814a30c980106a18824f576ada4287e67434", "messageHeadline": "updated particles docs", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 55, "deletions": 57}}, {"node": {"oid": "48be405a698d0e7e3b559865e98dc77484301ff9", "messageHeadline": "added eady model to generated docs", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 14, "deletions": 13}}, {"node": {"oid": "6e18f981c4ee29bf49186194e33439dd0a13462f", "messageHeadline": "Fixed `SLatissima` import", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "1658dd28066344aaafa6a8bad7cefc24ad9622c3", "messageHeadline": "Merge remote-tracking branch 'origin/main' into gpu-slatissima", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 461, "deletions": 458}}, {"node": {"oid": "c7ce80a4639604ecc51ce70269a20496fcee12a8", "messageHeadline": "run tests please", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "afcb27e7940799375843eed92191dce360fb01c0", "messageHeadline": "Added kelp figure back", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 22, "deletions": 78}}, {"node": {"oid": "61222b0348bf659bc4075215c31ee1de1a357b1e", "messageHeadline": "added eady model example", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 197, "deletions": 0}}, {"node": {"oid": "a008109227470ff2644b044561b48a2aaa8749f2", "messageHeadline": "fixed `SLatissima` export", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 0}}, {"node": {"oid": "141c3cd6faad0b598ff27ea0a32077525ca67e5e", "messageHeadline": "removed warning from `zero_negative_tracers!` as it is slow", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 5, "deletions": 5}}, {"node": {"oid": "7a20c3519d5a46b7b8080d02a18db507e9756fb0", "messageHeadline": "fixed `column` and `kelp` examples", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 95, "deletions": 74}}, {"node": {"oid": "2aa63a531fa39a0e1b1c7f5d4c4c65c24eeeaf2f", "messageHeadline": "Added another negativity protection", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 22, "deletions": 164}}, {"node": {"oid": "bcc8fbd7960af6f0a1baab06ab6b19f3ef9ff6cf", "messageHeadline": "updated steady state", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 35, "deletions": 41}}, {"node": {"oid": "01ef2a781a72ce61be392f5b6c6db8cb9b88ed1e", "messageHeadline": "Merge pull request #74 from OceanBioME/update-dependencies", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 462, "deletions": 459}}, {"node": {"oid": "dd6fa7ff716e5c20ed0ff6ff157f20befe8467cf", "messageHeadline": "expanded slatissima tests", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 18, "deletions": 1}}, {"node": {"oid": "87e31709213f89a82923aec57ac720188d0267ac", "messageHeadline": "fixed slatissima test (complete rehal coming soon)", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "75b0a02b99f055ed3bbbf5ba97b23db9b7d1e279", "messageHeadline": "Updated Oceananigans dependencies", "author": {"name": "Jago Strong-Wright", "email": "js2430@login-e-4.data.cluster", "user": null}, "additions": 460, "deletions": 457}}, {"node": {"oid": "e01c98758dddd915bb7623e9a922c7cb2a5ee1b9", "messageHeadline": "fixed sediment test", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 3, "deletions": 3}}, {"node": {"oid": "b4a16815ed237cf68bed3a6cf51eb856d2bf7c03", "messageHeadline": "Merge remote-tracking branch 'origin/main' into gpu-slatissima", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 0, "deletions": 0}}, {"node": {"oid": "becaa6d2ccd051bd5bc9274ed39f2f9d875efd9e", "messageHeadline": "removed old test", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 0, "deletions": 175}}, {"node": {"oid": "b9250d9508b3dd871f51deb06c809daa46117864", "messageHeadline": "changed from grid to arch stored in particles", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 14, "deletions": 14}}, {"node": {"oid": "5af6d8f044aff1978bc1768a9c37116c0482f934", "messageHeadline": "added tests for slatissima model", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 41, "deletions": 27}}, {"node": {"oid": "55b321591a8febf009b41f53a6ffd298f6383b5d", "messageHeadline": "particle output writing works now", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 6, "deletions": 0}}, {"node": {"oid": "efbb5033a2a148d6bb299a7fb5d3eb3a20991b50", "messageHeadline": "exudate redfield wrong way around", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 22, "deletions": 16}}, {"node": {"oid": "e19693c1fcf1a6d61d9ca05d01bc2355fee51812", "messageHeadline": "made it actually work", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "8e509904c5cb85fbc13701fe6089b4e3b3747e6c", "messageHeadline": "adapt structure update", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 1}}, {"node": {"oid": "0d4a436c58959afdaf75fa78e89228847375e721", "messageHeadline": "typo", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "9809dd24f0932b0c249a8632050788e507fd2ed4", "messageHeadline": "`get_nearest_nodes` doesn't work on GPU, and I can't think of a way t\u2026", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 74, "deletions": 55}}, {"node": {"oid": "13dfea2142d6a2a1ea6328680c674c98f51affe5", "messageHeadline": "sign error in nutrient uptake", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "9bdf1b8d184d2faa08e95c1711cb51f3bb49b6e9", "messageHeadline": "runs, is it working though?", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 22, "deletions": 28}}, {"node": {"oid": "e277d4e2c8142eff978fd6ac02b1836859788fb2", "messageHeadline": "added `adapt_structure` method", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 73, "deletions": 11}}, {"node": {"oid": "f3504055807401ac6e0f2eebfa243877af6e02d9", "messageHeadline": "`show`, `summary`, and `size` for `BiogeochemicalParticles`", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 19, "deletions": 2}}, {"node": {"oid": "d37cd6154375e8369f72b8ea9534a6fbdec09d3f", "messageHeadline": "auto set correct length of fields", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 11, "deletions": 11}}, {"node": {"oid": "651387668cf086ffb7060be0491f6968cac1c6aa", "messageHeadline": "provisional results seem reasonable", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 71, "deletions": 71}}, {"node": {"oid": "6b0115d0bcfbf2b8cd53f88501e0510adbb83bb1", "messageHeadline": "debugged and seems to run now", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 42, "deletions": 44}}, {"node": {"oid": "f0754b3d329290c93d225b37e3760c12ca736dae", "messageHeadline": "now compiles", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 223, "deletions": 500}}, {"node": {"oid": "20de2215ca8609ed9cc6e77749459887f49d7cd0", "messageHeadline": "not working but nearly there", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 299, "deletions": 125}}, {"node": {"oid": "90121e4392b2ff521416f06332d07cd0c9ed2a69", "messageHeadline": "unrelated changes", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 42, "deletions": 21}}, {"node": {"oid": "67e82654d200bd96d70c5a55415af35031d6b4c2", "messageHeadline": "mixup in order of slatissima forcing arguments", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 6, "deletions": 6}}, {"node": {"oid": "b47e905cff296c2f6441d8be2cc645ee2934554b", "messageHeadline": "another missing bit from slatissima model", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 24, "deletions": 9}}, {"node": {"oid": "520bf5d6bc0ae7689937d8759594a90f24cf776c", "messageHeadline": "typo in SLatissima model", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "7c568aff8d19f76d2fe9f1517e3a369a4f3b0e04", "messageHeadline": "added `arch_array` to kelp properties", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 8, "deletions": 6}}, {"node": {"oid": "5b196597d13342d3ea46e1b022e8687bb3420518", "messageHeadline": "Merge pull request #72 from OceanBioME/minor-example-tidying", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 14, "deletions": 141}}, {"node": {"oid": "b72b024a1d5404bca60a6290d0fa04d6cd3786e8", "messageHeadline": "removed old sediment example", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 0, "deletions": 128}}, {"node": {"oid": "7fe76d88df4de19ebea8b2f52ec488f0fd059eb1", "messageHeadline": "tidied up data forced plot", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "dd4b488d969eb3d23f6c24444fe9c1fc85e95779", "messageHeadline": "fixed particles bug", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 3, "deletions": 4}}, {"node": {"oid": "0152eb6094aac39e96054887ddc0a553e1ddc9eb", "messageHeadline": "fixed air/sea in data forced example", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 10, "deletions": 8}}, {"node": {"oid": "783e73e6f7c4441f87249c876b83eb20dbdf6f82", "messageHeadline": "Merge pull request #69 from OceanBioME/even-better-sediment", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1294, "deletions": 662}}, {"node": {"oid": "db6ac9104ee213f725207b692dc8390ba30fed53", "messageHeadline": "added automated test for sediments", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 208, "deletions": 127}}, {"node": {"oid": "dad8e18b26cc33ffbade3560f7d867de85a37276", "messageHeadline": "typo", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "a2667a80b9c6c235295453d4d008903106d8d19d", "messageHeadline": "missed an example", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "f06a48dbf906d9368866879dc2c37877f3712766", "messageHeadline": "fixed examples", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 4, "deletions": 7}}, {"node": {"oid": "12d48fa4538adf9ff14d1e95b4e4916550af9d73", "messageHeadline": "Merge remote-tracking branch 'origin/gpu-fixes' into even-better-sedi\u2026", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 10, "deletions": 2}}, {"node": {"oid": "04e2cf8c24fb38321d171f66971c1a40209afecd", "messageHeadline": "minor changes", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 41, "deletions": 17}}, {"node": {"oid": "bc357e0d772fa95df9fc36321ac8a37eb9446e08", "messageHeadline": "fixed docs", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 4}}, {"node": {"oid": "946ad60ec2c1257db3dcbd319f21933ca461b1ab", "messageHeadline": "run tests please", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 8, "deletions": 0}}, {"node": {"oid": "dfb36b8a3a11f6f0391ef9c71d222e97739c09d3", "messageHeadline": "fixed neg scaling for GPU", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 15, "deletions": 10}}, {"node": {"oid": "f469d444f234e051695aee165a9e796c91c2cd53", "messageHeadline": "added adapt structure for LOBSTER light attenuation", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "8e1ec3ba6e8993c2afacff9b0495d15a443a0fe5", "messageHeadline": "test is not updating oceananigans", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 455, "deletions": 336}}, {"node": {"oid": "920598459084b06a1411b388848c0a7a9d6bccea", "messageHeadline": "corrected spelling of implementation in docs", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 3, "deletions": 3}}, {"node": {"oid": "9694d9ad150e9076ea49a41a027e3cd04a54c4de", "messageHeadline": "added some docs for sediment", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 25, "deletions": 41}}, {"node": {"oid": "f4d169d151f4e4566749d7a1395b70cfc55272d8", "messageHeadline": "added RK3 timestepping for sediment", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 70, "deletions": 7}}, {"node": {"oid": "01d648bc168127556239fdddec138d40470e9daa", "messageHeadline": "added adapt structure for sediment", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 17, "deletions": 0}}, {"node": {"oid": "f2d0b8d4fea6a3dfa2dd75a3f6606add5cd8f9f5", "messageHeadline": "looks stable now", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 23, "deletions": 14}}, {"node": {"oid": "bc1573268fdfec4fb2096cf72beb7fa421ec66ac", "messageHeadline": "Merge remote-tracking branch 'origin/main' into even-better-sediment", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 11, "deletions": 10}}, {"node": {"oid": "1df9d4336f67a28d2d93593e62b54aff86938055", "messageHeadline": "added inline for negative tracer scaling for GPU", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "936af49b4568034bb84d6209b81450129c5c0146", "messageHeadline": "changes to test", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 66, "deletions": 18}}, {"node": {"oid": "5ff63d172f31d3f67d7792416d9ea1cb00d2668c", "messageHeadline": "fixed typo", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "3feb9f4c653d4b401b2a6f6a1397d86d3129ba22", "messageHeadline": "typo from old oceananigans version", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 12, "deletions": 11}}, {"node": {"oid": "dabac4cf0baf47de5313234049d869a2c090fc3d", "messageHeadline": "area flux to volume rate correction", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 6, "deletions": 4}}, {"node": {"oid": "bf8573b5c0cee9f09ccf62792b4510e3207eff97", "messageHeadline": "correction to rk3 error", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "a389618d29417199b9aa6ce92311e9c5ac505efe", "messageHeadline": "updated to more reasonable intiial conditions", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 12, "deletions": 8}}, {"node": {"oid": "b0fc7138321e52e9e8f193071ae01864f1c4baf1", "messageHeadline": "added error for RK3 timestepping with flat sediment model", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 4, "deletions": 2}}, {"node": {"oid": "2a9c9c4a92e4209d718cfa38cfc5dfb5bcbd801b", "messageHeadline": "added steady state LOBSTER model to find reasonable values for initia\u2026", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 48, "deletions": 0}}, {"node": {"oid": "3e3075e4d6a7f9ed514927ce10fe597daa9b0258", "messageHeadline": "looks vaguly reasonable", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 51, "deletions": 2}}, {"node": {"oid": "6ad4a91bd124de8cdb278ea94aa31f3bdb58fc99", "messageHeadline": "tidy up", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 6, "deletions": 6}}, {"node": {"oid": "4a7aa9225cb1c68a4f08f246a2b7de57a1edc93c", "messageHeadline": "working properly now", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 79, "deletions": 26}}, {"node": {"oid": "a4d495e14e64a451c64836c8c9dec6a440a16d18", "messageHeadline": "extended test for sediment", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 20, "deletions": 4}}, {"node": {"oid": "9c24207c730bc81e97aae89874118a56e508d301", "messageHeadline": "renamed sediment model and moved to separate file", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 122, "deletions": 121}}, {"node": {"oid": "a9d3d16a484bfc4ab1ed6ff5c66312cdc015768a", "messageHeadline": "resolved tendency/fields confusion", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 7, "deletions": 7}}, {"node": {"oid": "fcc1cd4a80ebf365a8eda6acc9c7fe965b418881", "messageHeadline": "removed redundant PAR field setup in lobster test", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 3, "deletions": 5}}, {"node": {"oid": "14e78d828577bb11f74140ebf4d23f653acf24ef", "messageHeadline": "updated fallback type signatures", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 12, "deletions": 12}}, {"node": {"oid": "132d98246dc6b5c0fc72a24e831a840b3e27974c", "messageHeadline": "added validation warning", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 0}}, {"node": {"oid": "48170dc492e981e6ce182ba43ca4b509e49bc0cf", "messageHeadline": "fix changes to tendencies", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 9, "deletions": 9}}, {"node": {"oid": "f732f483d0fb7a5d73878b5a668ac6caa798c241", "messageHeadline": "missed some `model.`s", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 7, "deletions": 3}}, {"node": {"oid": "fc2216723170512d45ddf69393080f2f260ddcde", "messageHeadline": "typo", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 8, "deletions": 3}}, {"node": {"oid": "ac7de194c8c1c015d5ad94f0dfec769bb0de17bb", "messageHeadline": "fixed tendency copying", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 40, "deletions": 25}}, {"node": {"oid": "3e9bee0dbdb74f820fa3a10bc3860f100f50c300", "messageHeadline": "removed old sediment model", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 0, "deletions": 167}}, {"node": {"oid": "78601d5eda2816f4b56c93146a52d0ac0d1844ea", "messageHeadline": "Refactored sediment model", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 324, "deletions": 72}}, {"node": {"oid": "0c0381444c428baa4e652a44cb9bee6e97be2ed0", "messageHeadline": "updated docs link in readme", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "ffb375e19b3413b0d25ecfb9ef253bed6e58c805", "messageHeadline": "some updates", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 21, "deletions": 4}}, {"node": {"oid": "88781a7b4a4307a072b2f98c020fc4efd7784b03", "messageHeadline": "Merge remote-tracking branch 'origin/main' into joss-paper", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 6353, "deletions": 2504}}, {"node": {"oid": "11b37806a4f2f275f51978213c7b25a58b4869f3", "messageHeadline": "wondering why tests workflow isn't running on direct push to main", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "131eb17e85df401f3f8035fcd48854dd6018878f", "messageHeadline": "added optional smoothing distance for sinking velocity fields", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 3, "deletions": 3}}, {"node": {"oid": "4f98dcef96c8011f3d41b4555cb6278fe68e1f2f", "messageHeadline": "Update README.md", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "51114eedf0d9483c629c588e73c709b3bb5b7ef1", "messageHeadline": "Update README.md", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "ac444ad20fec707b146642a65afdf9527d805a78", "messageHeadline": "Update README.md", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "37316099e98c80d8a69892fc9489f446a59a2827", "messageHeadline": "Update README.md", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "140f747df645c174b41c60aa534cf814fb99cda7", "messageHeadline": "Merge pull request #67 from OceanBioME/par-surface-values", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 136, "deletions": 117}}, {"node": {"oid": "96edfbb55e86e68670e6e6ae823abe89aacdc7bb", "messageHeadline": "fixed dependencies", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 3, "deletions": 5}}, {"node": {"oid": "c8c7d1923e1c89bc8f9b16b071620421f50838fe", "messageHeadline": "fixed box model example", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 4, "deletions": 3}}, {"node": {"oid": "821e6b3857274b3986ddd4905461ebb7f1aa6a16", "messageHeadline": "cleaned up dependencies", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 5, "deletions": 1}}, {"node": {"oid": "55b84b49af4e3424e3d844c4a9f0c050d5219868", "messageHeadline": "Fixed boundary conditions on PAR", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 127, "deletions": 126}}, {"node": {"oid": "ef87b7a95a84a893de12a26e30d64f97fe2dd831", "messageHeadline": "works for regularly spaced grid, for some reason not for irregular", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 16, "deletions": 1}}, {"node": {"oid": "f8c6941c1d8606b441d2a865eb1761da00f9d2c8", "messageHeadline": "added docs logo", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 0, "deletions": 0}}, {"node": {"oid": "3208dcb5b0f80c4ef5757fbdf32693b8f57ebce4", "messageHeadline": "Merge pull request #65 from OceanBioME/update-README", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 4, "deletions": 2}}, {"node": {"oid": "db72cd9f0ee52edb205ec922b4f07f90f69f174f", "messageHeadline": "added docs to readme", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 4, "deletions": 2}}, {"node": {"oid": "660182ff47e776e935817daa5b353ad201c5d0b8", "messageHeadline": "Merge pull request #60 from OceanBioME/Oceananigans-Update", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 3310, "deletions": 1872}}, {"node": {"oid": "fdeacdbff6ce63fa6aec5ad884fddbf98d6594b6", "messageHeadline": "docs work please", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 7, "deletions": 1}}, {"node": {"oid": "4efe2062c82245e376e80336bec0db34e8356a02", "messageHeadline": "docs not deploying?", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 8}}, {"node": {"oid": "0b306efb801b9f5feeb04a68f6f84bbe1738249b", "messageHeadline": "incorrect repo on docs", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "1a4e14c4dc3ca87a99dcaed68e13d27fc4d64938", "messageHeadline": "data deps in test", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 4, "deletions": 0}}, {"node": {"oid": "b15f3554ad1c3bb8bba97246c2ce772650537651", "messageHeadline": "fixed data forced example", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 4, "deletions": 4}}, {"node": {"oid": "4ce8900d3d54d52eff34e2b2766f2ddc49844fc5", "messageHeadline": "Merge remote-tracking branch 'origin/main' into Oceananigans-Update", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 0, "deletions": 0}}, {"node": {"oid": "17287af98b24f2a7ff97321d110b920a1625b339", "messageHeadline": "data deps in examples", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 3, "deletions": 0}}, {"node": {"oid": "dc3f64e490e969f345fea7425041b6e68fd879f5", "messageHeadline": "removed GLMakie", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 45, "deletions": 76}}, {"node": {"oid": "869c79d323077257c6293bf6c0cf917f26c4e6de", "messageHeadline": "fixed box models", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 5, "deletions": 3}}, {"node": {"oid": "8a25739ce5aff6fa1018e6dc23079aefbae3ae91", "messageHeadline": "fixed docs workflow?", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "1495450ebdc16d50a6651b825a10a0d2839b3c01", "messageHeadline": "added docs deployment and incrimented version number as this PR will \u2026", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 107, "deletions": 46}}, {"node": {"oid": "3983913bf9bdc2eaeb96483aae9e6a3a6c63730c", "messageHeadline": "Merge remote-tracking branch 'origin/Oceananigans-Update' into Oceana\u2026", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 4, "deletions": 1}}, {"node": {"oid": "c21690cbd023b503ffd48ecb48e171de6bc38a31", "messageHeadline": "finished updating auxiliary field implimentation", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 121, "deletions": 55}}, {"node": {"oid": "bbb1c4bb7b15acf061a21567d3d777003e862184", "messageHeadline": "removed manual auxiliary field adding", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 12}}, {"node": {"oid": "e86ac2b931b2b571402d2f738eb40aba031dca0d", "messageHeadline": "updated to OCMIP pCO2 calculation", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 157, "deletions": 64}}, {"node": {"oid": "739045c46cf0dc8bb8dae78fab4d7400a5478261", "messageHeadline": "Update README.md", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 1, "deletions": 0}}, {"node": {"oid": "8586c9f7ef80691d97ae7a94a100f84225657cde", "messageHeadline": "Update README.md", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 3, "deletions": 1}}, {"node": {"oid": "1906a1913e72cbfc96c53c2cc02fecd4cd0fa9ab", "messageHeadline": "minor docs changes", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 4, "deletions": 12}}, {"node": {"oid": "065997af6dd39bcb0f894ce0d60921988d209126", "messageHeadline": "docs and formatting", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 76, "deletions": 70}}, {"node": {"oid": "0bee8c33dee6808710843f19952671996fff0163", "messageHeadline": "Improved timestepping utilities (breaking change):", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 66, "deletions": 104}}, {"node": {"oid": "fdf7d25d3c69bae019b776206caa1505470d7a1c", "messageHeadline": "updated neg scaling in examples", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 7, "deletions": 5}}, {"node": {"oid": "4bcd9200d822483ea7569a39f9e50c2b5d3d63ef", "messageHeadline": "updated readme/docs index", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 10, "deletions": 160}}, {"node": {"oid": "aeeedd9db4d22b6f7d945ec6e325e8c00d1a9fde", "messageHeadline": "some particles docs", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 3, "deletions": 2}}, {"node": {"oid": "bdf5f1226e5d3e1ad574f8fd8768f79d34d28740", "messageHeadline": "updated model component docs", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 56, "deletions": 58}}, {"node": {"oid": "c9609abcd8774eee8816e17c6d38bad022e3c9e0", "messageHeadline": "added generalised negative tracer scaling with scalefactors", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 40, "deletions": 15}}, {"node": {"oid": "f04c8f626dec45ed9459f30a0c7d4a1b50e36d50", "messageHeadline": "kelp example fix", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "d3818be0ec3d9ece550e90ad4c525bbb6ec618f0", "messageHeadline": "Show and summary methods for box model", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 279, "deletions": 5}}, {"node": {"oid": "7ea86272541db6780c8da8b105528ca2635339b1", "messageHeadline": "Added summary and show methods for models", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 55, "deletions": 16}}, {"node": {"oid": "9bbe3915254e5cd1b5b8a3c59b34801c827df5b6", "messageHeadline": "Added adapt_structure for LOBSTER", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 209, "deletions": 91}}, {"node": {"oid": "e4441987e05a1e95cfabd9c9467697dc2ecefdd2", "messageHeadline": "random changes, moving to fawcett", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 87, "deletions": 37}}, {"node": {"oid": "2e9a26df373c6f6e2d94f3d52e4e176c2c5c8348", "messageHeadline": "Added CUDA to Project (for test)", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 8, "deletions": 7}}, {"node": {"oid": "f8c85d2b75df74a4eca2c72752751545dcb87bb6", "messageHeadline": "Fixed LOBSTER tests for GPU", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 29, "deletions": 27}}, {"node": {"oid": "12169b2316fe16d8bd620d673759a5679124d7ff", "messageHeadline": "some docs updates", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 18, "deletions": 51}}, {"node": {"oid": "06cf33fb804b945cbce0c56eae8d75a9fc86294d", "messageHeadline": "Fixed NPZD test", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 2}}, {"node": {"oid": "3fcc32b2bd8b46f0e59b6d764a03b18c68ab45ad", "messageHeadline": "Added error message when sinking_velocity_fields util is passed inval\u2026", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 9, "deletions": 11}}, {"node": {"oid": "37c4e1fa9ed9b387a6fb3dd53f5f404aa443a2d5", "messageHeadline": "Fixed default sinking speeds for NPZD model", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 4, "deletions": 7}}, {"node": {"oid": "20857318ca29b16d23ebfc57a10a590f205abaab", "messageHeadline": "Fixed NPZD for when no sinking velocities provided", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 77, "deletions": 4}}, {"node": {"oid": "33aa4a4c899c9ec01d5e114399dc7634184cda65", "messageHeadline": "Some improvement to NPZD example (don't think its got good starting c\u2026", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 18, "deletions": 19}}, {"node": {"oid": "bd69f837ddd6e28027bba164193254d7fbc27833", "messageHeadline": "Made boxmodel work with NPZD", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 72, "deletions": 1}}, {"node": {"oid": "edb852657c3b82eb68580be5c14b8bf2cad2b39d", "messageHeadline": "Tidied up SLatissima model", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 20, "deletions": 19}}, {"node": {"oid": "61f99934f5b4be89180aac7bd791c67ec9b98da4", "messageHeadline": "fixed kelp example", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "458d134bd67b1b3b97c63a1bc42fcd5437e9ca72", "messageHeadline": "Fixed NPZD model (now works I think)", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 29, "deletions": 17}}, {"node": {"oid": "95f05724688eaf0917c64dfd1a76c82ee473e4d1", "messageHeadline": "Merge remote-tracking branch 'origin/Oceananigans-Update' into Oceana\u2026", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 0, "deletions": 0}}, {"node": {"oid": "c3b5b24054840e8aa5afcf981c5fb84fa3fd5f8c", "messageHeadline": "Corrected LOBSTER zooplankton gut calcite dissolusion", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "f3fe4e9951445fc4f367ce4f47145ffa8fd5247d", "messageHeadline": "Moved models to submodules so they don't export their function at the\u2026", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 16, "deletions": 3}}, {"node": {"oid": "b92f43bcc316dfc9a200c0156e74ff5a368b6090", "messageHeadline": "Tidied documentation and examples", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 80, "deletions": 77}}, {"node": {"oid": "52c32738837479e5e4674b211f9f44fb6228be15", "messageHeadline": "Added carbon conservation from calcites and fixed carbon conservation", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 23, "deletions": 10}}, {"node": {"oid": "9acb0eb77f903fa2a8544236a8829d027ecc17cb", "messageHeadline": "Added carbon conservation from calcites", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 20, "deletions": 7}}, {"node": {"oid": "31f746a7721d32cebaff50993ae343bda69aa779", "messageHeadline": "Fixed sinking tracer issue with LOBSTER", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 24, "deletions": 23}}, {"node": {"oid": "ab0c21a398ba718cf5effec47bd2d6b08ce5f123", "messageHeadline": "Fixed some unit labelling in LOBSTER", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 4, "deletions": 4}}, {"node": {"oid": "38385865028cea2e22c4e196b7323c2e58dcf8fa", "messageHeadline": "Fixed gas exchange air concentration field", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 10, "deletions": 4}}, {"node": {"oid": "54877473b8f45dace2f1d45f3e8b264ff3ea99a8", "messageHeadline": "Removed abstract light model because failed on GPU and not needed", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 66, "deletions": 68}}, {"node": {"oid": "1ffe0f199b7734d4120aef07be90f16e1fcd6192", "messageHeadline": "Actually fixed tests", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 5, "deletions": 4}}, {"node": {"oid": "b005e6f8b40d2329193efe0fc52872741eb20eb5", "messageHeadline": "Added ability to use functions or fields for air gas concentration an\u2026", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 51, "deletions": 37}}, {"node": {"oid": "0b6a3e7ee5f511e7a692ac70e64622e613e54a3c", "messageHeadline": "Made it possible to pass function for air concentration", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 6, "deletions": 3}}, {"node": {"oid": "0e8c2de409715e2845708560b6d07da110629f99", "messageHeadline": "Accidentally added", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 0, "deletions": 27}}, {"node": {"oid": "a1038898988e116c448e71a69e599c105e9d707c", "messageHeadline": "tidied up and fixed tests", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 42, "deletions": 15}}, {"node": {"oid": "96a6ffb223c1940ab0751d87761eb51915934d30", "messageHeadline": "Fixed tests, DOM, and updated nomeclature in examples", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 65, "deletions": 40}}, {"node": {"oid": "6cc6b0db5fdf5ac5059193bbc63cc012d0f38cda", "messageHeadline": "Fixed some issues in LOBSTER and got carbon conservation working", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 105, "deletions": 49}}, {"node": {"oid": "8308ce57aee092690dfd5bca71ddd702f90d7997", "messageHeadline": "updated kelp model for new loster organic matter nomeclature", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 13, "deletions": 13}}, {"node": {"oid": "6da4acbbfa3f3e2e33bba8b996449a8ba39c60f7", "messageHeadline": "Added carbon conservaiton test", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 27, "deletions": 0}}, {"node": {"oid": "c3ac7bd61cf04e0f2f12597fd16f676c52890bce", "messageHeadline": "Changed OXY to O_2 and ALK to Alk", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 52, "deletions": 50}}, {"node": {"oid": "8b792bf6e14557e5f35107cf89f813f4c1b6afb9", "messageHeadline": "fixed kelp example", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 36, "deletions": 27}}, {"node": {"oid": "fcb86384bd70b457ff670bf0a293909f45af5719", "messageHeadline": "fixed error in slatissima n_min enforcement", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 51, "deletions": 49}}, {"node": {"oid": "24380bd6c1bce9db9212196e109be64815ff0c91", "messageHeadline": "changed to POM naming convention", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 73, "deletions": 75}}, {"node": {"oid": "26ffc17e71a2c26083a45bbf4c86553b4fa6ae09", "messageHeadline": "Added variable C:N DOM and moved variable C:N to optional tracer set", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 95, "deletions": 113}}, {"node": {"oid": "9ac504b673ecbfaf882761b21a033208b7c65bb9", "messageHeadline": "Added minimum nitrate concentration to kelp model", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 15, "deletions": 8}}, {"node": {"oid": "60283c02fdeb8d8b565dba9137a57e98b634a98f", "messageHeadline": "attempted to improve examples (not yet working properly for NPZD)", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 17, "deletions": 15}}, {"node": {"oid": "0a84cdece9b6ff41154cdc87a1dfdbfdcfd3ec4e", "messageHeadline": "added light attenuation to NPZD model", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 6, "deletions": 1}}, {"node": {"oid": "4eb6d07746aa143c48cd773cc01b5b5e3a22a57b", "messageHeadline": "Made it possible to call positivity preservation from intra-step call\u2026", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 11, "deletions": 9}}, {"node": {"oid": "bc5edf236da30c6d3ea43fbe75ce396b760daf3f", "messageHeadline": "Merge pull request #62 from OceanBioME/syou83syou83-patch-1", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 0, "deletions": 139}}, {"node": {"oid": "c2586e6e3e5925b5da317ac67143e2a1e4c195fb", "messageHeadline": "delete duplicate code", "author": {"name": "sichen", "email": "chensi.cs001@gmail.com", "user": {"login": "syou83syou83"}}, "additions": 0, "deletions": 139}}, {"node": {"oid": "184a4ed5deeafbef635c954699d7f8106caaf992", "messageHeadline": "Merge remote-tracking branch 'origin/main' into Oceananigans-Update", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 7, "deletions": 7}}, {"node": {"oid": "7018a2a21f582dfe43c130cd86fbf24791e7d310", "messageHeadline": "moved box model state update for lobster, and NPZD model", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 78, "deletions": 162}}, {"node": {"oid": "dbc57c7af931fef721a663d2fc08d619fed86bac", "messageHeadline": "Merge branch 'main' of github.com:sichen-org/BGC.jl into main", "author": {"name": "Si Chen", "email": "sc2350@charybdis.damtp.cam.ac.uk", "user": null}, "additions": 16, "deletions": 11}}, {"node": {"oid": "9d9fca6e4d39c7842386d88f9a4731c0e16862c5", "messageHeadline": "add my code of kelp example", "author": {"name": "Si Chen", "email": "sc2350@charybdis.damtp.cam.ac.uk", "user": null}, "additions": 139, "deletions": 0}}, {"node": {"oid": "e208603a7bebb390f569cab4f0e84baf55457168", "messageHeadline": "Merge pull request #61 from johnryantaylor/main", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 16, "deletions": 11}}, {"node": {"oid": "460d2c02e3dfd6ba8f7b585f8406406d92949549", "messageHeadline": "Modified comments in box.jl", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 16, "deletions": 11}}, {"node": {"oid": "969ac9e86ed34d738bb7aee709254fbec6bdc43d", "messageHeadline": "Updated NPZD model", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 116, "deletions": 89}}, {"node": {"oid": "5bc2a2e2dcffeb4fd4e00ac2c859bfd848d28999", "messageHeadline": "Fixed (?) examples", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 7, "deletions": 53}}, {"node": {"oid": "76dae845cbf34637c02831472801c58dc944b8c9", "messageHeadline": "Possibly improved kelp API", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 89, "deletions": 98}}, {"node": {"oid": "90c0267eb30ba19439aa48ff6e6908ff5f041bc4", "messageHeadline": "Added docstrings", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 56, "deletions": 4}}, {"node": {"oid": "bfa7069cf1b4cb94ea1777e1af1a0b745a1ddd48", "messageHeadline": "Replaced box model", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 248, "deletions": 124}}, {"node": {"oid": "ce59398e9fb4e85ce90e6ecb2793ae3b07acd4ac", "messageHeadline": "Restructured utils", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 109, "deletions": 274}}, {"node": {"oid": "0c810646e9c386bb23b0c7cb1f18013794511e00", "messageHeadline": "Updated some examples", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 54, "deletions": 59}}, {"node": {"oid": "3374c38e3de82a62ebd5bedd8132866dbedba9ba", "messageHeadline": "Added AbstractLightAttenuation for more flexibility", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 105, "deletions": 45}}, {"node": {"oid": "047b99ffa49228141c21b8491643fc5c26827661", "messageHeadline": "Fixed light attenuaiton and added test", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 50, "deletions": 230}}, {"node": {"oid": "67920d63d2a44d734940bfaf144b6c95fb18f2d8", "messageHeadline": "Modernised gas exchange", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 131, "deletions": 88}}, {"node": {"oid": "cfe80e1832a0c3b653b722daad17d553b7bacc37", "messageHeadline": "Improved light implimentation", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 90, "deletions": 88}}, {"node": {"oid": "c5b07b4157d6ed9f07a029a4f479e31bcfa6b031", "messageHeadline": "Added mass conservation test", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 18, "deletions": 2}}, {"node": {"oid": "0a751568fe81824b7ba4b04c1e2457f916cec85d", "messageHeadline": "Typo + temp move to Oceananigans branch for tests to run", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 46, "deletions": 8}}, {"node": {"oid": "b012f8fb65362c65c3096bb2ce4d258064ff1c62", "messageHeadline": "Fixed sinking velocity passing", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 29, "deletions": 9}}, {"node": {"oid": "a0c047a586a92a471241e9ee4e5ddb823328ca8a", "messageHeadline": "Merge remote-tracking branch 'origin/main' into Oceananigans-Update", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1718, "deletions": 418}}, {"node": {"oid": "94c61fe3d5c378b6d50d38073c9abee0609c0f08", "messageHeadline": "Setup closed bottom sinking and added test_suite", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 75, "deletions": 58}}, {"node": {"oid": "a3a381a72e11391326cb794e6f3787356ed275cb", "messageHeadline": "Added light attenuaiton model to LOBSTER", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 235, "deletions": 76}}, {"node": {"oid": "f2f61b576069b97311ce43d787024820ddf6f578", "messageHeadline": "Improved LOBSTER structure", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 414, "deletions": 409}}, {"node": {"oid": "02d9bed8d1114abc5474f43a8e0a7ef0ac28fb3c", "messageHeadline": "Setup LOBSTER", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 398, "deletions": 175}}, {"node": {"oid": "0c928482d44b2a3aff5d0632b479864e17db5645", "messageHeadline": "Fixed error in SLatissima and Particles setup", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 51, "deletions": 6}}, {"node": {"oid": "e1d27368fe3701846f54c049d971eaa1f26cd5b0", "messageHeadline": "Fixed error in SLatissima and Particles setup", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 51, "deletions": 6}}, {"node": {"oid": "15bbf70c123b81016795deeb5c8defaf1b0fd182", "messageHeadline": "Merge pull request #58 from OceanBioME/airseaflux-fix", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 32, "deletions": 23}}, {"node": {"oid": "7d37eb13d4d9c5aa88c27786d4284cc9c786c57d", "messageHeadline": "Fixed LOBSTER", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 7, "deletions": 8}}, {"node": {"oid": "56ca56aee5f624b87aa23537c77fb073ed3b362d", "messageHeadline": "didn't mean to remove docstrings", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 27, "deletions": 1}}, {"node": {"oid": "b3518b4b25683a6753f326c531705d93c91fd09b", "messageHeadline": "corrected", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "b22cdd7bade538fdfe76ee8fed3dcce52b79e5f8", "messageHeadline": "Files were named wrong", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 7, "deletions": 124}}, {"node": {"oid": "b0f69681b063f6a6f43cfa768052b8e6e7e29995", "messageHeadline": "Added order of magnitude test", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 16, "deletions": 0}}, {"node": {"oid": "eca35a0a8f392f8f72fec8786329b081532685d7", "messageHeadline": "Factor of a million out", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 85, "deletions": 0}}, {"node": {"oid": "df1b69c3b5a6a842647b1575533b0849fd32fdbb", "messageHeadline": "Bugfix", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "7eaea134e9048941d6dcbc214b5e7fef428b2030", "messageHeadline": "Fixed benchmarks", "author": {"name": "Jago Stong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 6, "deletions": 5}}, {"node": {"oid": "515ddc345f21e10aa808a0212ac0087e445678bb", "messageHeadline": "Hopefully made NPZD actually work now", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 18, "deletions": 14}}, {"node": {"oid": "40232dd5be48779150876aad8287dc8b2450b87e", "messageHeadline": "Added dosctrings and documentation infrastructure", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1700, "deletions": 469}}, {"node": {"oid": "345a72e653347e4766129c0fe28f59dc58bdecfe", "messageHeadline": "Added NPZD model in new Oceananigans format", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 350, "deletions": 13}}, {"node": {"oid": "0c780206c16b67cb323164c9a656825a8ac50c76", "messageHeadline": "Still doesn't work", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 23, "deletions": 28}}, {"node": {"oid": "bc22f8069666218ea52b8af7bb8f53669effe9ea", "messageHeadline": "tryng to trigger workflow", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 0}}, {"node": {"oid": "aa26cf40f7e839cf01cab8d5cdb5d3e2ae7f9e5b", "messageHeadline": "Merge branch 'main' into docs", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 0, "deletions": 0}}, {"node": {"oid": "3a4d09041f8f1dd4cb9bee5dd592a9a8ab2dbfff", "messageHeadline": "Tidied docstrings and fixed quick start", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 153, "deletions": 36}}, {"node": {"oid": "3e0e4b9fa8f54284ed7909a89217722ceb330ae0", "messageHeadline": "Added docstrings for everything!", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 530, "deletions": 112}}, {"node": {"oid": "e9c7869edbf48e600fc33537961954d27f85c6ae", "messageHeadline": "Forgot to couple tracers in kelp example!", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 3, "deletions": 0}}, {"node": {"oid": "159943874d9bebcb03a477655766f2cb140a8cc3", "messageHeadline": "Removed old file", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 0, "deletions": 84}}, {"node": {"oid": "8cb247be514a63117f73aafcea9aab963cd9bba4", "messageHeadline": "Removed old file", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 0, "deletions": 102}}, {"node": {"oid": "1c6bba7a004d4cdbb3e74009b93c1f3868d0db28", "messageHeadline": "Finished documenting examples", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 13, "deletions": 12}}, {"node": {"oid": "8d8623d6418766c185c4bcbe7b89f6076ce301de", "messageHeadline": "Added more docstrings and fixed box model", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1079, "deletions": 213}}, {"node": {"oid": "0c429bc6782d5b304520fb725b1b22c3db91bf70", "messageHeadline": "Merge remote-tracking branch 'origin/main' into docs", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 746, "deletions": 2128}}, {"node": {"oid": "5d6370ab260f1c6743683d7074ba7114af4de9bd", "messageHeadline": "Merge remote-tracking branch 'origin/main' into docs", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 0, "deletions": 0}}, {"node": {"oid": "db4fb3764d1c6d57cacde96dec0f79cf8708d2e7", "messageHeadline": "modified make.jl", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 6, "deletions": 6}}, {"node": {"oid": "bb6c93a7982c7e5eb3b4d17729b04361e50cbaeb", "messageHeadline": "Fixed SLatissima model particle output", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "2214ae28e54dd5404052bc99e1bc8125d8592d0e", "messageHeadline": "Fixed kelp mode", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "ce70eea02114ab3b13065a24aefffc48ebd19d70", "messageHeadline": "Particle production was wrong", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "d0cfd9a6321f49cfd33928f1f64b099cf192a3dd", "messageHeadline": "Lots of fixes", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2263, "deletions": 1329}}, {"node": {"oid": "734c0439316e3f29767ebef7454b2bf71c8e4fb4", "messageHeadline": "Fixed benchmarks and (hopefully) sediment model", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 8, "deletions": 12}}, {"node": {"oid": "c2ec083d5301ee58acafef70bd38ae61eaa35b3f", "messageHeadline": "Think fixed by updating Project and Manifest (oops) plus added some b\u2026", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1237, "deletions": 18}}, {"node": {"oid": "749e2b97967533fdf1b10fb40bc17e2b31262fa3", "messageHeadline": "trying to fix tests pt 2", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 10, "deletions": 0}}, {"node": {"oid": "ad4806bf224bf021cae3dc2a4ba111ce837b45ef", "messageHeadline": "trying to fix tests", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 0, "deletions": 1}}, {"node": {"oid": "baea8e54cfbcb75f3953c8371df152ca10db15f7", "messageHeadline": "trying to trigger buildkite", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 7, "deletions": 10}}, {"node": {"oid": "bbc717ca26fb3b7243d63a3a0c07abedc44996d3", "messageHeadline": "Peformance improvements", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 7, "deletions": 2}}, {"node": {"oid": "bb81251d36cc2f1a19c40701289eb959bd0453a9", "messageHeadline": "Fixed LOBSTER tests", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 33, "deletions": 27}}, {"node": {"oid": "15f8cdbaa2e161e904bd51f071cc26779a254e41", "messageHeadline": "Don't know why the test gave that error, it should have worked", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "a71614fdfeeb8dbe2043042cab14901acea97e3b", "messageHeadline": "Merge remote-tracking branch 'origin/main' into various-fixes", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 0, "deletions": 0}}, {"node": {"oid": "fad3b13d860019da74e3ba68b2b5ec0e2234ce7d", "messageHeadline": "Optimisations to particles so its not ridiculously slow anymore", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 11, "deletions": 9}}, {"node": {"oid": "84d8a86cb3056f630492402b0b3f4413f165d860", "messageHeadline": "Fixed examples", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 5, "deletions": 2}}, {"node": {"oid": "c6e5068f4a88d88c74e172bf9ae35fe3fcb80b0c", "messageHeadline": "fixed kelp example and inlined lobster forcing", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 13, "deletions": 13}}, {"node": {"oid": "b9b63adf9393aa48346f6137acaa8b6083676c7a", "messageHeadline": "Added carbon compartement to LOBSTER detritus model, updated kelp mod\u2026", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 351, "deletions": 377}}, {"node": {"oid": "5a43c61cd4ebb7275a493df072dd02d211379da1", "messageHeadline": "Merge branch 'docs' of github.com:OceanBioME/OceanBioME.jl into docs", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 7}}, {"node": {"oid": "7d76a1dfc7b8b466d50b009566b96d15e40358a8", "messageHeadline": "fixed examples more", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1136, "deletions": 215}}, {"node": {"oid": "6b3629d1b6be0d4aca7de1d8ef3926c1037761fb", "messageHeadline": "Fixed SLatissima model", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 61, "deletions": 43}}, {"node": {"oid": "e1002427bb1b2fa9886cda91abe50dcd27be55c6", "messageHeadline": "Moved particle integration to use state callbacks", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 183, "deletions": 232}}, {"node": {"oid": "e7bf08f9a7cbf0ffc7d7556691386ddc57e6130e", "messageHeadline": "Changed model directory structure,", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 3}}, {"node": {"oid": "f9f05b65a71e3294c8f881ea4a5cee0d9d4b7b7f", "messageHeadline": "Moved Oceananigans modifcations", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 26, "deletions": 884}}, {"node": {"oid": "17424e0c880d37340c4dc7b404fc03ac4b5ef95d", "messageHeadline": "Sediment model fixed but very very slow", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 5, "deletions": 2}}, {"node": {"oid": "0e8d616e776e16f5e467b635cf3b32c7c493bf0e", "messageHeadline": "a few fixes", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 25, "deletions": 22}}, {"node": {"oid": "5b0d67e1435481d4de70a75ffdf2301f09332b47", "messageHeadline": "fixed examples more", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1120, "deletions": 211}}, {"node": {"oid": "f3ff8ca14ae7b8ce24a7106bed538f70d112134e", "messageHeadline": "added docs dependencies", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 89, "deletions": 94}}, {"node": {"oid": "79b170121af5dd4c8ef2a5158051b6f0a9bb5ff5", "messageHeadline": "Merge branch 'various-fixes' of github.com:OceanBioME/OceanBioME.jl i\u2026", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2051, "deletions": 1442}}, {"node": {"oid": "95104c1ea4c3b172d151bf36487737ccad8541a7", "messageHeadline": "minor", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "df1acd2894de4385ba623dac65f9ae89399a1f92", "messageHeadline": "Finally fixed sediment model to conserve nitrogen", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 14, "deletions": 15}}, {"node": {"oid": "56b909600f836c78c49ee12ee313e1a54662ca48", "messageHeadline": "Hopefully fixed!", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 165, "deletions": 77}}, {"node": {"oid": "04d40a4d49cee10fa8f812bfe893f9b56f93d2c2", "messageHeadline": "Improved tendency timestepping adaptation", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 27, "deletions": 17}}, {"node": {"oid": "042f125abc32808c1343cd396e946a1b66a0748b", "messageHeadline": "Weird error, may be fixed?", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "4c6fc21882373e190b39f77401caf9006d402739", "messageHeadline": "Still getting the wrong oceananigans version...", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 138, "deletions": 46}}, {"node": {"oid": "7e510f06fd57ff28e9859efe48dece1c01a18459", "messageHeadline": "Tests run locally so maybe this will fix them?", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 13, "deletions": 4}}, {"node": {"oid": "c465af2a56192bbca49341efb6096ad88fca18e1", "messageHeadline": "Oops didn't add my mess of plotting tools", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 212, "deletions": 0}}, {"node": {"oid": "9979d6df9a488c9e54b6b3d1dea0f222e82bc45e", "messageHeadline": "Fixed tests", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 21, "deletions": 16}}, {"node": {"oid": "e2516bcddd21eed7eb932a55a2345e723a153852", "messageHeadline": "Hopefully fixed sediment model, still validating", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 82, "deletions": 127}}, {"node": {"oid": "00aabd6f8baa5069e00a63262297e05891eba2a5", "messageHeadline": "Fixed (will test) Project.toml", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 72, "deletions": 986}}, {"node": {"oid": "034b30de6614ab48d30e4a09d25f6e97738fb51e", "messageHeadline": "Fixed examples", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 5, "deletions": 12}}, {"node": {"oid": "bf81944bf0e5d294023bcf8d18aedeebcc637ce2", "messageHeadline": "Changed to use DataDeps.jl for example forcing data", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 13, "deletions": 31}}, {"node": {"oid": "13674616782c388170f312fadd51775e1eb06aad", "messageHeadline": "Some way to fixing data forced example", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 21, "deletions": 20}}, {"node": {"oid": "cb20b6f2dc7ca9148df6771e3e431610289870fb", "messageHeadline": "Fixed (?) column and kelp example, take about 15min each to run", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 95, "deletions": 174}}, {"node": {"oid": "486bcc0b87effdf6ff79be003ae86bd47027f23f", "messageHeadline": "Fixed negative scaling utils", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 5, "deletions": 2}}, {"node": {"oid": "4ec2d807ac5ed979c75c32be7824777f6e80c006", "messageHeadline": "Added scaling negatives utility", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 29, "deletions": 1}}, {"node": {"oid": "e09791a92e24a560cc19165684f53db2e9f2d7eb", "messageHeadline": "Changed smooth to zero distance", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "8aa49dc5c2128f1cbf76a0873fcad340c49ed557", "messageHeadline": "Hopefully fixed stability and conservation from sinking", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 16, "deletions": 21}}, {"node": {"oid": "244eeb2f6951713bad014cab9f9fae5e819da27e", "messageHeadline": "Merge pull request #53 from OceanBioME/slatissima-fix", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "87de7aff28c4bc6e813fda2f8cf5814307ec9fb3", "messageHeadline": "fixed kelp to conserve nitrates (hopefully)", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "62f2d40d004725072407df23c34be76ccb72f013", "messageHeadline": "Fixed what I broke in LOBSTER", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 12, "deletions": 3}}, {"node": {"oid": "105be616a9357b3950178c65640e240e32dced31", "messageHeadline": "Added model components and quickstart", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 317, "deletions": 34}}, {"node": {"oid": "7093b97a5105ca3a4ff8d3a89f6b38ac5a342d59", "messageHeadline": "Initial docs setup and some content", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 531, "deletions": 0}}, {"node": {"oid": "e5694633ba55724b11596af1ed2d9560bc646734", "messageHeadline": "Reverted to different sinking implimentation", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 43, "deletions": 60}}, {"node": {"oid": "c5a735eb754c3e1321b31969510a78bebd181dac", "messageHeadline": "A version of advection that allows divergent slip velocities but requ\u2026", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 4, "deletions": 4}}, {"node": {"oid": "0ae89e6d195806d0cbb20009de47be845cec01fe", "messageHeadline": "Fixed tests", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 30, "deletions": 15}}, {"node": {"oid": "71c43e9e4de3111036f97346e4f6c7bbcc836100", "messageHeadline": "Minor fixes", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 34, "deletions": 24}}, {"node": {"oid": "0c1b3d327c4d0c3e0176c63b1f44aea02ad62c4d", "messageHeadline": "Fixed mass conservation issue in LOBSTER", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 38, "deletions": 30}}, {"node": {"oid": "d09f8ab4d24cbbe06e4ad93832b0898a95b4cbcb", "messageHeadline": "updated examples", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 76, "deletions": 56}}, {"node": {"oid": "6f49ee27dc119cf19238b475c709a1c71a294e44", "messageHeadline": "Pulled auxiliary field forcing content from PISCES", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1081, "deletions": 121}}, {"node": {"oid": "cc404462f5ef39c549a02b96e9790fa4089498aa", "messageHeadline": "Changes to examples just so I can leave branch", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 248, "deletions": 169}}, {"node": {"oid": "0d5e3208291c5eba84be237c275ec65f95cd9e65", "messageHeadline": "Fixed bug in Particles", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 5, "deletions": 4}}, {"node": {"oid": "e213561f82919c8464e20852eb6e656cd3f8b71a", "messageHeadline": "updated utils", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 19, "deletions": 10}}, {"node": {"oid": "4a84f3dbc3d89d5db078729cc2b04503041a7d52", "messageHeadline": "Updated SLatissima model to conserve nitrates from exudates", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 5, "deletions": 3}}, {"node": {"oid": "cecc527766f81fb1233d0a0268485e1340f1892c", "messageHeadline": "forgot I'd not updated fields stuff yet", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 17, "deletions": 0}}, {"node": {"oid": "6951e86107a752e6e088620efef69bf46ed65a45", "messageHeadline": "cleaned up LOBSTER", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 127, "deletions": 40}}, {"node": {"oid": "542ab8247122e4d57508c2ec55cb4c8ee1f4b71c", "messageHeadline": "Added basic utility to prevent negative tracers", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 36, "deletions": 7}}, {"node": {"oid": "9c45059d186a273121d8202df47c800d02bbc704", "messageHeadline": "Changed a little for oceananigans integration", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 5, "deletions": 5}}, {"node": {"oid": "b2d4ac5fccfb9ce07b5f87a7e043d5ef6c5d235e", "messageHeadline": "Merge pull request #46 from OceanBioME/particle-optional-tracers", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 145, "deletions": 203}}, {"node": {"oid": "07c6c436c5d156dcec98c7ab8d03f61437e94aad", "messageHeadline": "Hadn't updated test properly", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 12, "deletions": 16}}, {"node": {"oid": "911d3ffc79d6428187a098a3c0799f5d21071268", "messageHeadline": "Removed plotting utilities from main package", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 17, "deletions": 208}}, {"node": {"oid": "05d8e908a082644889a0ee89a9ad55c999735124", "messageHeadline": "Fixed dependencies and kelp example", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 48, "deletions": 20}}, {"node": {"oid": "f910052150a6f3b518409c68b2d01dc2f13cce1e", "messageHeadline": "Changed particles to have optional tracer dependencies", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 106, "deletions": 71}}, {"node": {"oid": "1e13617604b1e6e0ae477251f370f6f3b9b2fc0d", "messageHeadline": "Added kelp plotting", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 78, "deletions": 4}}, {"node": {"oid": "0c054f0ae8cb144ef7d11ca85ef103e94be926fd", "messageHeadline": "Fixed tests (hopefully)", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 3, "deletions": 3}}, {"node": {"oid": "de90ef55867346239ce8bd389986cfe2dc630937", "messageHeadline": "Temporary change for the benefit of timestep utility, forgot to add b\u2026", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 0}}, {"node": {"oid": "908aed2144f5b91fd0628b19e8903b534ed18114", "messageHeadline": "Added Oceananigans dependancy version and removed SugarKelp.jl depend\u2026", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 335, "deletions": 293}}, {"node": {"oid": "961e202877cdae8f83cd344d8cc81f14441c38e6", "messageHeadline": "Changed example names", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 19, "deletions": 23}}, {"node": {"oid": "2fd53c4f09883492f051437f38e01cbd6e5956f1", "messageHeadline": "Improved timestep wizard to prevent instability from tracer forcing", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 39, "deletions": 35}}, {"node": {"oid": "457721abab53276911fe219e20c60ec40e1c5c05", "messageHeadline": "Merge branch 'main' of github.com:syou83syou83/Lobster.jl into main", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 4, "deletions": 1}}, {"node": {"oid": "f70b05036927df2b89113296df93a46aa59de87b", "messageHeadline": "Corrected boundary timestep calculation", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "29b701afc2ec0fecbc9da681837207605349ce92", "messageHeadline": "Merge pull request #41 from johnryantaylor/main", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 4, "deletions": 1}}, {"node": {"oid": "b88cec75be0c60ba460bdff8eaa33fff5508df07", "messageHeadline": "Merge branch 'main' into main", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 322, "deletions": 27}}, {"node": {"oid": "c87edb9f4abecaa331e6c4c1e540b8dce6784659", "messageHeadline": "Removed sign enforcement in sediment boundary conditions (origionally\u2026", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 3, "deletions": 3}}, {"node": {"oid": "ce2d04a382c38a6ebb64a600088e0d2319cdbecd", "messageHeadline": "Typo", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 3}}, {"node": {"oid": "733997808fcb86165fd663c15b38b3875412b0f8", "messageHeadline": "Fixed output writer for sediment examples", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 3, "deletions": 2}}, {"node": {"oid": "c838a1293956f35d9b4b4d321981cca7c0f61376", "messageHeadline": "Added flux boundary timestep adaptation and refined cfl estimate", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 33, "deletions": 9}}, {"node": {"oid": "139363274bef82ea718c89730a35db7815dfda26", "messageHeadline": "First draft", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 148, "deletions": 0}}, {"node": {"oid": "4bb4fb717d5345604a8d5b05beb93278e9eac761", "messageHeadline": "Added flux boundary timestep adaptation", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 33, "deletions": 9}}, {"node": {"oid": "7402bc39ee28d2a01bfd8cf4c4f011e809ff1e5d", "messageHeadline": "Improved timestep utility and found appropriate c_max", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 6, "deletions": 4}}, {"node": {"oid": "52509e4bb4ea4e50268bc1f140512d340db204c7", "messageHeadline": "Fixed zero area bug", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "2d5887166933b7325184bd9096ce929325afa611", "messageHeadline": "Removed debugging @show and sign error from timestep util", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "f569c168ba957379d0fe6d30b163cb006cdb3e1a", "messageHeadline": "Fixed kelp example", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "479224dbaa9e374fd896ad1a5c882944277f214c", "messageHeadline": "Fixed \u03bd and e in kelp model", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 277, "deletions": 8}}, {"node": {"oid": "35910e58ba686ff794988dc3576b0df21fcdfa42", "messageHeadline": "Timesteps, K_A, and typos", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 8, "deletions": 8}}, {"node": {"oid": "6a883f5d0bd00d141ac5bf2b9374f643d49c057f", "messageHeadline": "Update box.jl", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 4, "deletions": 1}}, {"node": {"oid": "599fcec432d072a54934a94e94e78dd8076d12c4", "messageHeadline": "Merge pull request #39 from OceanBioME/no-flux-velocity", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 249, "deletions": 361}}, {"node": {"oid": "5a0826305009ab209f2ec8e0614ab80dc322ebe4", "messageHeadline": "Fixed typo", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "43653ea38bc9f95901a3befcf0d81ec7a9f9e79f", "messageHeadline": "Added instability warning for timestep utility and turned off by default", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 8, "deletions": 4}}, {"node": {"oid": "aa1ac0c3c4a445f04ba3abef0a76759c045eb896", "messageHeadline": "Fixed timestep util", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "0d29c86cadebbdaa93af0908ed6652f1a6a5af0a", "messageHeadline": "Merge remote-tracking branch 'origin/main' into no-flux-velocity", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 54, "deletions": 0}}, {"node": {"oid": "06249242959997eb116fd5fb432b39caf193f4ea", "messageHeadline": "Unmessed up example I broke", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 95, "deletions": 122}}, {"node": {"oid": "f1a5ff835c2059b9aacbf947a1dfbdb533ea3a63", "messageHeadline": "Improved timestep calculations and modified examples", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 223, "deletions": 326}}, {"node": {"oid": "498c55dc1946f58f6b2d90dbfc9fbe08c9ff6e41", "messageHeadline": "Update readme.md", "author": {"name": "sichen", "email": "chensi.cs001@gmail.com", "user": {"login": "syou83syou83"}}, "additions": 26, "deletions": 19}}, {"node": {"oid": "2bc4628c8bc38f738f191409ec9d5989437d1af2", "messageHeadline": "add an overview for the examples folder", "author": {"name": "Si Chen", "email": "sc2350@charybdis.damtp.cam.ac.uk", "user": null}, "additions": 47, "deletions": 0}}, {"node": {"oid": "734fbb3eea4d70b3b4259b8a093fe063f82412a5", "messageHeadline": "Merge remote-tracking branch 'origin/main' into no-flux-velocity", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 161, "deletions": 0}}, {"node": {"oid": "c95d23ef9c4279336d351d62a5cf703ea98178af", "messageHeadline": "Added timestep calculator", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 38, "deletions": 26}}, {"node": {"oid": "24008bc81532adbb4b22497f9b3d8946d85e5c2b", "messageHeadline": "Merge branch 'main' of github.com:sichen-org/BGC.jl into main", "author": {"name": "Si Chen", "email": "sc2350@charybdis.damtp.cam.ac.uk", "user": null}, "additions": 10, "deletions": 4}}, {"node": {"oid": "0a4bd9f143ae543ab340ff16f1a4a51c5959afdd", "messageHeadline": "add a more complex lobster example using imported data with detailed \u2026", "author": {"name": "Si Chen", "email": "sc2350@charybdis.damtp.cam.ac.uk", "user": null}, "additions": 161, "deletions": 0}}, {"node": {"oid": "286938fce31084b4988d375169fcde0dce189402", "messageHeadline": "Added (1-e^-(z-d)) optional factor to make sinking speed go to zero", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 8, "deletions": 6}}, {"node": {"oid": "9fe6e2a13092541ff400dfe4387a9e5254670cb6", "messageHeadline": "Changed cfl number in examples", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 10, "deletions": 4}}, {"node": {"oid": "a931a178a857f533443ddde00d2e61fc9b32faf7", "messageHeadline": "Merge pull request #37 from OceanBioME/tests", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 323, "deletions": 98}}, {"node": {"oid": "329ff6612eb9343e8bb08697277b26f92522831a", "messageHeadline": "Removed recording from test (as doesn't seem to work) and updated kel\u2026", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 31, "deletions": 34}}, {"node": {"oid": "b150a096af3ed2fa187fec1c8d67e1b9c9a3fc5a", "messageHeadline": "add more explanations and comments", "author": {"name": "Si Chen", "email": "sc2350@charybdis.damtp.cam.ac.uk", "user": null}, "additions": 46, "deletions": 40}}, {"node": {"oid": "22d0d8e92feba7a124239e6532d6d29de6fbc114", "messageHeadline": "Updated dependencies", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 16, "deletions": 33}}, {"node": {"oid": "32ebe32c97441e67d05aec6741250b2f8c576cca", "messageHeadline": "Merge branch 'tests' of github.com:syou83syou83/Lobster.jl into tests", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 131, "deletions": 5}}, {"node": {"oid": "ff84aac0c1283f765a541914a650713879a6e8db", "messageHeadline": "Fixed light test", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "a64b134c08e52976a88a977383abfaf4ab8e2b64", "messageHeadline": "Merge branch 'main' into tests", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 131, "deletions": 5}}, {"node": {"oid": "3367368596b86033d1ce78e700b70684ed114c1d", "messageHeadline": "Retrigger test", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 0}}, {"node": {"oid": "05c591d5948f3dd4bd52ec33d4ed46d0505e8d13", "messageHeadline": "Trigger tests", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 3, "deletions": 2}}, {"node": {"oid": "2cb7a5585eb21f68764a42e96b2067759e119b92", "messageHeadline": "Final fixes", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 100, "deletions": 66}}, {"node": {"oid": "e7bbfbbad562d1bb0ebf105f78ded30974b9079a", "messageHeadline": "Finally spotted the issue, missing \u0394t!", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "9e0aeea4392695736d2b4b5b2ab82dfa8e045b49", "messageHeadline": "Further fixes to sediment model", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 52, "deletions": 45}}, {"node": {"oid": "3dc61e57c6d363d9ccab0b6e63c5eb10a4aed555", "messageHeadline": "Changed sediment detritus boundary enforcement", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 36, "deletions": 25}}, {"node": {"oid": "37b8b0197d7d228cfc3bfbd7957243514009941e", "messageHeadline": "very simplified lobster model, idealised mld and surface PAR, not com\u2026", "author": {"name": "Si Chen", "email": "sc2350@charybdis.damtp.cam.ac.uk", "user": null}, "additions": 126, "deletions": 0}}, {"node": {"oid": "153c72bae5cf088e397812481d5983b5f236a58b", "messageHeadline": "Added test simulations checking nitrate conservation +other fixes", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 216, "deletions": 25}}, {"node": {"oid": "f7e43995072ee965db551fcfbea8c3cd627d274f", "messageHeadline": "Added Moore Foundation in funding acknowledgements", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "8cd89c4f87b9418584515ae9984850f74ac193e2", "messageHeadline": "updated logo file", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 0, "deletions": 0}}, {"node": {"oid": "4a7999b642f7630aa4ad1529110b96c802870e9d", "messageHeadline": "Added new version of the logo", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "205c070f0b24f90166e308f6b2f72e6c94c26a25", "messageHeadline": "Added new logo and title image", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 0, "deletions": 0}}, {"node": {"oid": "bb03b9e0db1ab142e9c9f55e208a19eec2a5e02f", "messageHeadline": "deleted unused logo", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 0, "deletions": 0}}, {"node": {"oid": "41ecbba9163c9da00c429079b3b02a5e76cbf2fb", "messageHeadline": "Deleted logo for new update", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 0, "deletions": 0}}, {"node": {"oid": "6ddce24ac784b6116810487687f1d3f9df52e737", "messageHeadline": "Update README.md", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 3, "deletions": 3}}, {"node": {"oid": "6d10051b6ed00cbce7468123f3f784f8a70623a0", "messageHeadline": "Merge branch 'main' of github.com:syou83syou83/Lobster.jl into main", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 155, "deletions": 62}}, {"node": {"oid": "fdd3b4e1986688c42d9a902915ff7d902f197a05", "messageHeadline": "Added automatic test running", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 40, "deletions": 0}}, {"node": {"oid": "d8ef6fb68c897e5a643373bd77dabfd11c9e8380", "messageHeadline": "Merge pull request #35 from OceanBioME/particles-conserve-tracers", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 136, "deletions": 51}}, {"node": {"oid": "7b7b173492476137d9551aebdb57d304bee836b7", "messageHeadline": "Fixed light attenuation and tests", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 25, "deletions": 7}}, {"node": {"oid": "89a31feb42a76ebdec2e886d3ab8563f57745d28", "messageHeadline": "Checked and fixed light test (since I changed the light implimentatio\u2026", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "318d38fde89bb9d61eac70c175ad5e2bff57fd0e", "messageHeadline": "Added test for area scaled sink", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 22, "deletions": 1}}, {"node": {"oid": "9e70c50dcc81de291384e446e11b91474fc0e7b2", "messageHeadline": "Modified particles to conserve tracers if pulling below zero", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 89, "deletions": 43}}, {"node": {"oid": "353b7164e54469a395b241cef87ce2d90e546b44", "messageHeadline": "Merge pull request #33 from johnryantaylor/main", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 17, "deletions": 10}}, {"node": {"oid": "bdb1bb220d467dad95f2bfcda739228738cbf9c1", "messageHeadline": "Merge branch 'main' of https://github.com/johnryantaylor/OceanBioME.jl", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 240, "deletions": 195}}, {"node": {"oid": "8857127b80e55934ae0566686d90f43d99162698", "messageHeadline": "edits to kelp.jl and box.jl", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 23, "deletions": 16}}, {"node": {"oid": "3dd855f109d33f3a0dee317d58c1778e77eb1758", "messageHeadline": "Fixed new bug in subpolar, separated sediment example (as unstable), \u2026", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 191, "deletions": 24}}, {"node": {"oid": "5a0c551f6eb0b954c41ba686c458b8afabff338b", "messageHeadline": "Updated examples for smaller forcing data file and fixed minor error \u2026", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 51, "deletions": 173}}, {"node": {"oid": "2ced7293bacaafcee48ae07dcb6614eb02fbf9a5", "messageHeadline": "Fixed box examples parameters", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1, "deletions": 10}}, {"node": {"oid": "02db142898e4454a413e8b2a10151e6e86e3a018", "messageHeadline": "Merge branch 'main' of github.com:syou83syou83/Lobster.jl into main", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 12, "deletions": 6}}, {"node": {"oid": "ad3967fa81b35fe0739904e6c65b6073938d5f17", "messageHeadline": "Attampted to fix timestep choice, and added bottom refined grid spaci\u2026", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 39, "deletions": 333}}, {"node": {"oid": "0789608d806d0860f33f041bb13f4d562c4546ef", "messageHeadline": "Merge pull request #25 from johnryantaylor/main", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 12, "deletions": 310}}, {"node": {"oid": "308b8e1b1796e5f0df29b4f2e1498255363a10cf", "messageHeadline": "update to box.jl", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 12, "deletions": 310}}, {"node": {"oid": "d07f070299a495d0f62af0d621f30635fe6b4b8b", "messageHeadline": "Typo in plotting", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 4, "deletions": 4}}, {"node": {"oid": "fc232ef5d2739c459e42d0920be89c985fdb452b", "messageHeadline": "Merge pull request #10 from sichen-org/boundaries", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1409, "deletions": 651}}, {"node": {"oid": "33d68bbe2dccec44fe625e96645951c06f2ad661", "messageHeadline": "merged changes from main", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 55, "deletions": 34}}, {"node": {"oid": "030dfd7caf92b080560698ca369aaa5d53ed1759", "messageHeadline": "renamed example to examples", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 0, "deletions": 0}}, {"node": {"oid": "7799967577302f256fdc826428a2e68ee1245bea", "messageHeadline": "Updated examples and updated plotting suite", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 354, "deletions": 331}}, {"node": {"oid": "e6f0db2496f579eecc509ae1dcf931e4633af236", "messageHeadline": "Fixed minor bug in LOBSTER", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 463, "deletions": 125}}, {"node": {"oid": "2e4e64d78de6057a990a4b09370f50520d35b4cb", "messageHeadline": "Added more comments to the subpolar.jl example", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 71, "deletions": 111}}, {"node": {"oid": "331384a8bc2f532c31971793b06fff3c40793b38", "messageHeadline": "Added more comments to the subpolar.jl example", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 71, "deletions": 111}}, {"node": {"oid": "7a9ce9646eed961b075fbcc5ec452b56a1f2b688", "messageHeadline": "Merge pull request #20 from johnryantaylor/main", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 17, "deletions": 14}}, {"node": {"oid": "69be70836a9063c3bc6c0e280ae0648416651577", "messageHeadline": "Made a few small changes to the comments inside LOBSTER.jl", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 17, "deletions": 14}}, {"node": {"oid": "1ba6f1d3a12f2306a3c3f37b1c58f05ecc8ed5c7", "messageHeadline": "add comments and explanations in LOBSTER.jl", "author": {"name": "Si Chen", "email": "chensi.cs001@gmail.com", "user": {"login": "syou83syou83"}}, "additions": 21, "deletions": 11}}, {"node": {"oid": "55693fcafc212d8fd3152f9766167c0b4287d53b", "messageHeadline": "minor adjustment: the order of initial conditions of tracers to be co\u2026", "author": {"name": "Si Chen", "email": "chensi.cs001@gmail.com", "user": {"login": "syou83syou83"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "7d05862d175635435c3a69c74999a986f2ca6ac7", "messageHeadline": "Finally fixed issue #5, and (think) fixed sediment", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 43, "deletions": 30}}, {"node": {"oid": "ef34a471675443d3015a0c85b5bf33efd5b10e57", "messageHeadline": "add comments in kelp.jl", "author": {"name": "Si Chen", "email": "sc2350@charybdis.damtp.cam.ac.uk", "user": null}, "additions": 30, "deletions": 36}}, {"node": {"oid": "4705472d2a2d78985787ef6ad1f7b4caf55ebc11", "messageHeadline": "test a setup with stretched grid", "author": {"name": "Si Chen", "email": "sc2350@charybdis.damtp.cam.ac.uk", "user": null}, "additions": 21, "deletions": 3}}, {"node": {"oid": "efe6356a90b0ed6837c5283abf41e34af18f0f1c", "messageHeadline": "add more comments in subpolar.jl, particularly using PAR as a field", "author": {"name": "Si Chen", "email": "sc2350@charybdis.damtp.cam.ac.uk", "user": null}, "additions": 19, "deletions": 13}}, {"node": {"oid": "d7d4097b5cc6cba33d5fddf5dc6953e9a9fe23fd", "messageHeadline": "add comments in subpolar.jl", "author": {"name": "Si Chen", "email": "sc2350@charybdis.damtp.cam.ac.uk", "user": null}, "additions": 60, "deletions": 49}}, {"node": {"oid": "da7821e7f04f7f98062e369babeb25392b9ed73d", "messageHeadline": "Fixes to O\u2082 air/sea flux and sediment model", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 14, "deletions": 13}}, {"node": {"oid": "7719eff4296d827f6d57ee8e09fb2d4d0f5e6995", "messageHeadline": "fixes to SLatissima model", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 23, "deletions": 12}}, {"node": {"oid": "2ccb794e37a41a036e951d455427862126891728", "messageHeadline": "Fixed name change and minor issues", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 46, "deletions": 39}}, {"node": {"oid": "f3d7f8e37ff2b9561e017bf54f3e4a4c23d2f903", "messageHeadline": "Revert \"add forcing annual cycle data\"", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 0, "deletions": 3}}, {"node": {"oid": "79d205bcfcf93bb46792d737dbac0d55fe1e502f", "messageHeadline": "Revert \"Fixed airseaflux problems\"", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 7, "deletions": 108}}, {"node": {"oid": "3697bf29a41f573db18d8fcdbbd8731bfb43851d", "messageHeadline": "Merge branch 'boundaries' of github.com:syou83syou83/Lobster.jl into \u2026", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 105, "deletions": 0}}, {"node": {"oid": "ac0b8370f62a67d42acb7b3d0d97bc233d21c8ab", "messageHeadline": "Added SLatissima model with NH4 coupling", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 188, "deletions": 118}}, {"node": {"oid": "8a1c8144a98d7dfbc9f89baac37ed855fa356dab", "messageHeadline": "fixed conflicts (PAR_func rename unneccesary and confusing)", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 75, "deletions": 52}}, {"node": {"oid": "b04bfa1e0bf032ccf46195cffc28b157b37abd7c", "messageHeadline": "Minor fixes and added sediment boundary conditions", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 174, "deletions": 22}}, {"node": {"oid": "91be731640d6087f1803b11c23f7c0b444b4b67a", "messageHeadline": "Minor fixes and added sediment boundary conditions", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 161, "deletions": 21}}, {"node": {"oid": "3e62710b672107599835140dda303ba839dc9f75", "messageHeadline": "Merge pull request #15 from johnryantaylor/main", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "3b6a8bbf38f5d91958c781577947e423a4e54e8a", "messageHeadline": "Add files via upload", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 0, "deletions": 0}}, {"node": {"oid": "e9d9b434d7563e7923c959f6904fe8b3768610f9", "messageHeadline": "Update README.md", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "b9b389856daec2cf04e86359e603c786f981577e", "messageHeadline": "Add files via upload", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 0, "deletions": 0}}, {"node": {"oid": "93d22ae64f49ae1d5041405c0e83889937aac52d", "messageHeadline": "Merge pull request #14 from johnryantaylor/main", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 10, "deletions": 9}}, {"node": {"oid": "7dc913c782976fb6cb6ee1101640b6e8cd08704a", "messageHeadline": "Update box.jl", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 10, "deletions": 9}}, {"node": {"oid": "69afb61ba897b01fefbbd2df751541f629356a41", "messageHeadline": "Merge pull request #13 from johnryantaylor/main", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 29, "deletions": 16}}, {"node": {"oid": "09358392c7f46bad8c14d11ada33e656e5ea329a", "messageHeadline": "Update box.jl", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 28, "deletions": 15}}, {"node": {"oid": "2a0e4b6338b13c8683d7bc29fa467983a74d21d9", "messageHeadline": "Update README.md", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "f0c869d6ef9ef5ef037997a208da091ea2860708", "messageHeadline": "Merge pull request #12 from johnryantaylor/main", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "ee2021257d62f9f56ce661becec22f1cda0a2d4e", "messageHeadline": "Update README.md", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "23326c65885746d09c4a6df86bb3f108384bda5e", "messageHeadline": "Update README.md", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "308466ee5214fcd28d8fa335f64ff18c4d4e5d82", "messageHeadline": "Merge pull request #11 from johnryantaylor/main", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 31, "deletions": 23}}, {"node": {"oid": "4a50352acfbfdc5a49e669d162a5ce55a49973d5", "messageHeadline": "Update box.jl", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 2, "deletions": 2}}, {"node": {"oid": "90ec25c76b7bd33ab9aef1b9f8f40ac28275352f", "messageHeadline": "Update README.md", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "d1b6d7d2878e89a8a443c9479413e04e02650e29", "messageHeadline": "Update README.md", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "ec07414cc58e2c53698cbf78522d0320a801b03b", "messageHeadline": "Add files via upload", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 0, "deletions": 0}}, {"node": {"oid": "bc5b95bcee48786db6e74a03286531896c290e28", "messageHeadline": "Update README.md", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 0, "deletions": 1}}, {"node": {"oid": "58bba7777735dfe49304b639815f808f672f6fa6", "messageHeadline": "Update README.md", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 2, "deletions": 1}}, {"node": {"oid": "8530215aaca3dc78ab9733d356a5bb9e102afb32", "messageHeadline": "Update README.md", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "29e61ea96ad0a0d40144a8f138e098827d92068e", "messageHeadline": "Uploaded logo with text", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 0, "deletions": 0}}, {"node": {"oid": "824da01a33fd04d8ccee2ec68346ede31c661540", "messageHeadline": "Update README.md", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "3d27f0db5e91661b2bbf3557203795e6e2190828", "messageHeadline": "Update README.md", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 29, "deletions": 21}}, {"node": {"oid": "64192bd49decbfcd2a5b8762b658e9973e476706", "messageHeadline": "fixed a few bugs in subpolar.jl with PAR as a function, and correspon\u2026", "author": {"name": "Si Chen", "email": "sc2350@charybdis.damtp.cam.ac.uk", "user": null}, "additions": 14, "deletions": 14}}, {"node": {"oid": "2cc43636dbe23f65e9d0a475525bdf1139fba295", "messageHeadline": "add forcing annual cycle data", "author": {"name": "Si Chen", "email": "sc2350@charybdis.damtp.cam.ac.uk", "user": null}, "additions": 3, "deletions": 0}}, {"node": {"oid": "5d0652c8ab8c11cee8440505d86750d579fff7fc", "messageHeadline": "Minor changes, new boundary conditions now work well", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 4, "deletions": 4}}, {"node": {"oid": "e290e7f8cc090d5437dd471104de665d1a929c88", "messageHeadline": "Fixed more problems and restructured", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 222, "deletions": 165}}, {"node": {"oid": "0803f26aa370c7a3a035bf2be0866a042010b1ac", "messageHeadline": "Fixed airseaflux problems", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 70, "deletions": 38}}, {"node": {"oid": "8d990219279c1b6f32a79c0a48c9760056203732", "messageHeadline": "Generalised airseaflux and added oxygen to LOBSTER", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 88, "deletions": 52}}, {"node": {"oid": "8cebffd0dadb8dc66496f85fe061519c029d43c5", "messageHeadline": "Merge pull request #8 from sichen-org/change-setup", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 109, "deletions": 56}}, {"node": {"oid": "4b3ec54be37a9c235ec55bb47c8ad0237c9bc6b5", "messageHeadline": "Added model definition instructions", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 21, "deletions": 1}}, {"node": {"oid": "b1c9e3e538a35944b312acfdca22d1816e37e4bd", "messageHeadline": "Changed optional variable structure (so that has to be less function \u2026", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 88, "deletions": 55}}, {"node": {"oid": "23229d8715dab99c394d721d856e563755b9e574", "messageHeadline": "Merge pull request #7 from sichen-org/restructure", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 221, "deletions": 130}}, {"node": {"oid": "fbbdb9466978cdffb21b84694fd4d8614df4613c", "messageHeadline": "Box model solver working", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 86, "deletions": 53}}, {"node": {"oid": "98dcc0f974572ea7826056138f5f889bba4f7ca5", "messageHeadline": "Added box model solver", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 68, "deletions": 15}}, {"node": {"oid": "bfcdb88a4b8d1fdcd6bddd1d3aa12c1db2c51ba4", "messageHeadline": "Initial attampt at restructuring to separate out oceananigans", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 114, "deletions": 109}}, {"node": {"oid": "bf6c54fcfc39a3ae879fa3815c1c668bfd4a22db", "messageHeadline": "Added particle updating and some testing", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1344, "deletions": 113}}, {"node": {"oid": "4d69185ba17abcb8c8bc310a7e7c0487e9c40a8d", "messageHeadline": "Coupled all variables for kelp model", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 94, "deletions": 21}}, {"node": {"oid": "4ceaf80de371744d5d40079ccd37d5bddeed6e87", "messageHeadline": "test add Oceananigans day because using BGC doesn't work", "author": {"name": "Si Chen", "email": "chensi.cs001@gmail.com", "user": {"login": "syou83syou83"}}, "additions": 1, "deletions": 1}}, {"node": {"oid": "2bc7518ade973ba201e77e870e51c6182b4aeaea", "messageHeadline": "Added test for light attenuation function and kelp particle plotting", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 42, "deletions": 3}}, {"node": {"oid": "1dd9c3631702a957130c824db84101165b20a505", "messageHeadline": "Added some documentation", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 73, "deletions": 5}}, {"node": {"oid": "80d733a7c15d7c31f5a7c4b446b2592be8674388", "messageHeadline": "Merge remote-tracking branch 'origin/main' into kelp", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 88, "deletions": 39}}, {"node": {"oid": "c9a5cf588c066d843e639a223639bcd4cb5b28b9", "messageHeadline": "Rename Lobster.jl to LOBSTER.jl", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 0, "deletions": 0}}, {"node": {"oid": "2ab73d75e5d36c32c61af998825a61e30920ae5d", "messageHeadline": "Finished particle updating and added tests to check conservation of s\u2026", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 359, "deletions": 220}}, {"node": {"oid": "6137ef26bdca39f0b19cb06b29dde02be6d43cc0", "messageHeadline": "Added include and export NPZ in main file", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 9, "deletions": 8}}, {"node": {"oid": "ae7cdb93d00f7bf59b10a448493adca180068b0e", "messageHeadline": "Merge pull request #2 from johnryantaylor/main", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 55, "deletions": 6}}, {"node": {"oid": "f15de53a0292f1cbd76473a2b43453a89c2421bd", "messageHeadline": "Create NPZ.jl", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 49, "deletions": 0}}, {"node": {"oid": "22399bd8dadce648e25cd8f0cc5910ec65718d98", "messageHeadline": "Update to README.md", "author": {"name": "johnryantaylor", "email": "johnryantaylor@gmail.com", "user": {"login": "johnryantaylor"}}, "additions": 6, "deletions": 6}}, {"node": {"oid": "b2593f2545297d6cf033a586d5b9fcedfc67bf02", "messageHeadline": "First attempt at integrating kelp into library", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 422, "deletions": 1}}, {"node": {"oid": "fedd43836e1578b9b13e484f040f790ee2168c75", "messageHeadline": "Moved plotting to library utility", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 601, "deletions": 109}}, {"node": {"oid": "4308773db2e5d96b8fd60bd456e7a45725c12fd6", "messageHeadline": "Merge pull request #1 from sichen-org/new_par", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 263, "deletions": 109}}, {"node": {"oid": "b9e89954ad15449f7e4523f34aeaf3da3fa9dd7c", "messageHeadline": "Merge pull request #1 from sichen-org/new_par", "author": {"name": "Jago Strong-Wright", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 263, "deletions": 109}}, {"node": {"oid": "3844ea3c1b38cb0bb9befee1c32abb7efea848c9", "messageHeadline": "Refactored for flexibility, and new PAR hopefully working (results lo\u2026", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 259, "deletions": 147}}, {"node": {"oid": "ce05c8f58304887468716f0f17a8ac50e4c5fa2b", "messageHeadline": "Merge branch 'main' into new_par", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 74, "deletions": 45}}, {"node": {"oid": "00d9c2184b3c179c441eb79ee05027a3d5050a81", "messageHeadline": "Changed so that T, S, and PAR can be functions which seems to result \u2026", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 74, "deletions": 45}}, {"node": {"oid": "3f83b7babcd092247d7576836a1bf243861f0704", "messageHeadline": "Vertically integrated chl for PAR added", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 49, "deletions": 7}}, {"node": {"oid": "21b5ad12ba95a92f1917c9df22c98234c55a047a", "messageHeadline": "Some refactoring", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 19, "deletions": 19}}, {"node": {"oid": "7a4e42da1937d70d64a0bbb2bb54564fd45f086b", "messageHeadline": "Reformatted to be slightly more consistent with Oceanigans", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 15, "deletions": 7}}, {"node": {"oid": "ab7bfe536311bd18b05d6b63d82f57dd9cf7ee00", "messageHeadline": "First attempt (results seem to match up)", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 1738, "deletions": 2}}, {"node": {"oid": "a13bc0bc231fd9c5ff8817d1583aef0ecdcc91a5", "messageHeadline": "Initial Commit", "author": {"name": "Jago", "email": "jagoosw@protonmail.com", "user": {"login": "jagoosw"}}, "additions": 11, "deletions": 0}}]