kylewisialowski/new_wdl_data
01
1instruction,input,output,text2Add a scatter-gather loop for the task in the following WDL.,"version 1.03 4task stepA_1 {5 input {6 File item7 }8 command <<<9 echo ""Processing ~{item}""10 cp ~{item} out_1.txt11 >>>12 output {13 File out = ""out_1.txt""14 }15}16 17task stepB_1 {18 input {19 Array[File] files20 }21 command <<<22 cat ~{sep=' ' files} > merged_1.txt23 >>>24 output {25 File merged = ""merged_1.txt""26 }27}28 29workflow run_1 {30 input {31 File item32 }33 call stepA_1 { input: item = item }34 call stepB_1 { input: files = [stepA_1.out] }35 36 output {37 File merged = stepB_1.merged38 }39}40","version 1.041 42task stepA_1 {43 input {44 File item45 }46 command <<<47 echo ""Processing ~{item}""48 cp ~{item} out_1.txt49 >>>50 output {51 File out = ""out_1.txt""52 }53}54 55task stepB_1 {56 input {57 Array[File] files58 }59 command <<<60 cat ~{sep=' ' files} > merged_1.txt61 >>>62 output {63 File merged = ""merged_1.txt""64 }65}66 67workflow run_1 {68 input {69 Array[File] items70 }71 scatter (f in items) {72 call stepA_1 { input: item = f }73 }74 call stepB_1 { input: files = stepA_1.out }75 76 output {77 Array[File] stepA_outputs = stepA_1.out78 File merged = stepB_1.merged79 }80}81","Below is an instruction that describes a task. Write a response that appropriately completes the request.82 83### Instruction:84Add a scatter-gather loop for the task in the following WDL.85 86### Input:87version 1.088 89task stepA_1 {90 input {91 File item92 }93 command <<<94 echo ""Processing ~{item}""95 cp ~{item} out_1.txt96 >>>97 output {98 File out = ""out_1.txt""99 }100}101 102task stepB_1 {103 input {104 Array[File] files105 }106 command <<<107 cat ~{sep=' ' files} > merged_1.txt108 >>>109 output {110 File merged = ""merged_1.txt""111 }112}113 114workflow run_1 {115 input {116 File item117 }118 call stepA_1 { input: item = item }119 call stepB_1 { input: files = [stepA_1.out] }120 121 output {122 File merged = stepB_1.merged123 }124}125 126 127### Response:128version 1.0129 130task stepA_1 {131 input {132 File item133 }134 command <<<135 echo ""Processing ~{item}""136 cp ~{item} out_1.txt137 >>>138 output {139 File out = ""out_1.txt""140 }141}142 143task stepB_1 {144 input {145 Array[File] files146 }147 command <<<148 cat ~{sep=' ' files} > merged_1.txt149 >>>150 output {151 File merged = ""merged_1.txt""152 }153}154 155workflow run_1 {156 input {157 Array[File] items158 }159 scatter (f in items) {160 call stepA_1 { input: item = f }161 }162 call stepB_1 { input: files = stepA_1.out }163 164 output {165 Array[File] stepA_outputs = stepA_1.out166 File merged = stepB_1.merged167 }168}169"170Add a scatter-gather loop for the task in the following WDL.,"version 1.0171 172task stepA_2 {173 input {174 File f175 }176 command <<<177 echo ""Processing ~{f}""178 cat ~{f} out_2.txt179 >>>180 output {181 File out = ""out_2.txt""182 }183}184 185task stepB_2 {186 input {187 Array[File] files188 }189 command <<<190 cat ~{sep=' ' files} > merged_2.txt191 >>>192 output {193 File merged = ""merged_2.txt""194 }195}196 197workflow run_2 {198 input {199 File f200 }201 call stepA_2 { input: f = f }202 call stepB_2 { input: files = [stepA_2.out] }203 204 output {205 File merged = stepB_2.merged206 }207}208","version 1.0209 210task stepA_2 {211 input {212 File f213 }214 command <<<215 echo ""Processing ~{f}""216 cat ~{f} out_2.txt217 >>>218 output {219 File out = ""out_2.txt""220 }221}222 223task stepB_2 {224 input {225 Array[File] files226 }227 command <<<228 cat ~{sep=' ' files} > merged_2.txt229 >>>230 output {231 File merged = ""merged_2.txt""232 }233}234 235workflow run_2 {236 input {237 Array[File] fs238 }239 scatter (f in fs) {240 call stepA_2 { input: f = f }241 }242 call stepB_2 { input: files = stepA_2.out }243 244 output {245 Array[File] stepA_outputs = stepA_2.out246 File merged = stepB_2.merged247 }248}249","Below is an instruction that describes a task. Write a response that appropriately completes the request.250 251### Instruction:252Add a scatter-gather loop for the task in the following WDL.253 254### Input:255version 1.0256 257task stepA_2 {258 input {259 File f260 }261 command <<<262 echo ""Processing ~{f}""263 cat ~{f} out_2.txt264 >>>265 output {266 File out = ""out_2.txt""267 }268}269 270task stepB_2 {271 input {272 Array[File] files273 }274 command <<<275 cat ~{sep=' ' files} > merged_2.txt276 >>>277 output {278 File merged = ""merged_2.txt""279 }280}281 282workflow run_2 {283 input {284 File f285 }286 call stepA_2 { input: f = f }287 call stepB_2 { input: files = [stepA_2.out] }288 289 output {290 File merged = stepB_2.merged291 }292}293 294 295### Response:296version 1.0297 298task stepA_2 {299 input {300 File f301 }302 command <<<303 echo ""Processing ~{f}""304 cat ~{f} out_2.txt305 >>>306 output {307 File out = ""out_2.txt""308 }309}310 311task stepB_2 {312 input {313 Array[File] files314 }315 command <<<316 cat ~{sep=' ' files} > merged_2.txt317 >>>318 output {319 File merged = ""merged_2.txt""320 }321}322 323workflow run_2 {324 input {325 Array[File] fs326 }327 scatter (f in fs) {328 call stepA_2 { input: f = f }329 }330 call stepB_2 { input: files = stepA_2.out }331 332 output {333 Array[File] stepA_outputs = stepA_2.out334 File merged = stepB_2.merged335 }336}337"338Add a scatter-gather loop for the task in the following WDL.,"version 1.0339 340task stepA_3 {341 input {342 File infile343 }344 command <<<345 echo ""Processing ~{infile}""346 cp ~{infile} out_3.txt347 >>>348 output {349 File out = ""out_3.txt""350 }351}352 353task stepB_3 {354 input {355 Array[File] files356 }357 command <<<358 cat ~{sep=' ' files} > merged_3.txt359 >>>360 output {361 File merged = ""merged_3.txt""362 }363}364 365workflow run_3 {366 input {367 File infile368 }369 call stepA_3 { input: infile = infile }370 call stepB_3 { input: files = [stepA_3.out] }371 372 output {373 File merged = stepB_3.merged374 }375}376","version 1.0377 378task stepA_3 {379 input {380 File infile381 }382 command <<<383 echo ""Processing ~{infile}""384 cp ~{infile} out_3.txt385 >>>386 output {387 File out = ""out_3.txt""388 }389}390 391task stepB_3 {392 input {393 Array[File] files394 }395 command <<<396 cat ~{sep=' ' files} > merged_3.txt397 >>>398 output {399 File merged = ""merged_3.txt""400 }401}402 403workflow run_3 {404 input {405 Array[File] infiles406 }407 scatter (f in infiles) {408 call stepA_3 { input: infile = f }409 }410 call stepB_3 { input: files = stepA_3.out }411 412 output {413 Array[File] stepA_outputs = stepA_3.out414 File merged = stepB_3.merged415 }416}417","Below is an instruction that describes a task. Write a response that appropriately completes the request.418 419### Instruction:420Add a scatter-gather loop for the task in the following WDL.421 422### Input:423version 1.0424 425task stepA_3 {426 input {427 File infile428 }429 command <<<430 echo ""Processing ~{infile}""431 cp ~{infile} out_3.txt432 >>>433 output {434 File out = ""out_3.txt""435 }436}437 438task stepB_3 {439 input {440 Array[File] files441 }442 command <<<443 cat ~{sep=' ' files} > merged_3.txt444 >>>445 output {446 File merged = ""merged_3.txt""447 }448}449 450workflow run_3 {451 input {452 File infile453 }454 call stepA_3 { input: infile = infile }455 call stepB_3 { input: files = [stepA_3.out] }456 457 output {458 File merged = stepB_3.merged459 }460}461 462 463### Response:464version 1.0465 466task stepA_3 {467 input {468 File infile469 }470 command <<<471 echo ""Processing ~{infile}""472 cp ~{infile} out_3.txt473 >>>474 output {475 File out = ""out_3.txt""476 }477}478 479task stepB_3 {480 input {481 Array[File] files482 }483 command <<<484 cat ~{sep=' ' files} > merged_3.txt485 >>>486 output {487 File merged = ""merged_3.txt""488 }489}490 491workflow run_3 {492 input {493 Array[File] infiles494 }495 scatter (f in infiles) {496 call stepA_3 { input: infile = f }497 }498 call stepB_3 { input: files = stepA_3.out }499 500 output {501 Array[File] stepA_outputs = stepA_3.out502 File merged = stepB_3.merged503 }504}505"506Add a scatter-gather loop for the task in the following WDL.,"version 1.0507 508task stepA_4 {509 input {510 File infile511 }512 command <<<513 echo ""Processing ~{infile}""514 cp ~{infile} out_4.txt515 >>>516 output {517 File out = ""out_4.txt""518 }519}520 521task stepB_4 {522 input {523 Array[File] files524 }525 command <<<526 cat ~{sep=' ' files} > merged_4.txt527 >>>528 output {529 File merged = ""merged_4.txt""530 }531}532 533workflow run_4 {534 input {535 File infile536 }537 call stepA_4 { input: infile = infile }538 call stepB_4 { input: files = [stepA_4.out] }539 540 output {541 File merged = stepB_4.merged542 }543}544","version 1.0545 546task stepA_4 {547 input {548 File infile549 }550 command <<<551 echo ""Processing ~{infile}""552 cp ~{infile} out_4.txt553 >>>554 output {555 File out = ""out_4.txt""556 }557}558 559task stepB_4 {560 input {561 Array[File] files562 }563 command <<<564 cat ~{sep=' ' files} > merged_4.txt565 >>>566 output {567 File merged = ""merged_4.txt""568 }569}570 571workflow run_4 {572 input {573 Array[File] infiles574 }575 scatter (f in infiles) {576 call stepA_4 { input: infile = f }577 }578 call stepB_4 { input: files = stepA_4.out }579 580 output {581 Array[File] stepA_outputs = stepA_4.out582 File merged = stepB_4.merged583 }584}585","Below is an instruction that describes a task. Write a response that appropriately completes the request.586 587### Instruction:588Add a scatter-gather loop for the task in the following WDL.589 590### Input:591version 1.0592 593task stepA_4 {594 input {595 File infile596 }597 command <<<598 echo ""Processing ~{infile}""599 cp ~{infile} out_4.txt600 >>>601 output {602 File out = ""out_4.txt""603 }604}605 606task stepB_4 {607 input {608 Array[File] files609 }610 command <<<611 cat ~{sep=' ' files} > merged_4.txt612 >>>613 output {614 File merged = ""merged_4.txt""615 }616}617 618workflow run_4 {619 input {620 File infile621 }622 call stepA_4 { input: infile = infile }623 call stepB_4 { input: files = [stepA_4.out] }624 625 output {626 File merged = stepB_4.merged627 }628}629 630 631### Response:632version 1.0633 634task stepA_4 {635 input {636 File infile637 }638 command <<<639 echo ""Processing ~{infile}""640 cp ~{infile} out_4.txt641 >>>642 output {643 File out = ""out_4.txt""644 }645}646 647task stepB_4 {648 input {649 Array[File] files650 }651 command <<<652 cat ~{sep=' ' files} > merged_4.txt653 >>>654 output {655 File merged = ""merged_4.txt""656 }657}658 659workflow run_4 {660 input {661 Array[File] infiles662 }663 scatter (f in infiles) {664 call stepA_4 { input: infile = f }665 }666 call stepB_4 { input: files = stepA_4.out }667 668 output {669 Array[File] stepA_outputs = stepA_4.out670 File merged = stepB_4.merged671 }672}673"674Add a scatter-gather loop for the task in the following WDL.,"version 1.0675 676task stepA_5 {677 input {678 File item679 }680 command <<<681 echo ""Processing ~{item}""682 cp ~{item} out_5.txt683 >>>684 output {685 File out = ""out_5.txt""686 }687}688 689task stepB_5 {690 input {691 Array[File] files692 }693 command <<<694 cat ~{sep=' ' files} > merged_5.txt695 >>>696 output {697 File merged = ""merged_5.txt""698 }699}700 701workflow run_5 {702 input {703 File item704 }705 call stepA_5 { input: item = item }706 call stepB_5 { input: files = [stepA_5.out] }707 708 output {709 File merged = stepB_5.merged710 }711}712","version 1.0713 714task stepA_5 {715 input {716 File item717 }718 command <<<719 echo ""Processing ~{item}""720 cp ~{item} out_5.txt721 >>>722 output {723 File out = ""out_5.txt""724 }725}726 727task stepB_5 {728 input {729 Array[File] files730 }731 command <<<732 cat ~{sep=' ' files} > merged_5.txt733 >>>734 output {735 File merged = ""merged_5.txt""736 }737}738 739workflow run_5 {740 input {741 Array[File] items742 }743 scatter (f in items) {744 call stepA_5 { input: item = f }745 }746 call stepB_5 { input: files = stepA_5.out }747 748 output {749 Array[File] stepA_outputs = stepA_5.out750 File merged = stepB_5.merged751 }752}753","Below is an instruction that describes a task. Write a response that appropriately completes the request.754 755### Instruction:756Add a scatter-gather loop for the task in the following WDL.757 758### Input:759version 1.0760 761task stepA_5 {762 input {763 File item764 }765 command <<<766 echo ""Processing ~{item}""767 cp ~{item} out_5.txt768 >>>769 output {770 File out = ""out_5.txt""771 }772}773 774task stepB_5 {775 input {776 Array[File] files777 }778 command <<<779 cat ~{sep=' ' files} > merged_5.txt780 >>>781 output {782 File merged = ""merged_5.txt""783 }784}785 786workflow run_5 {787 input {788 File item789 }790 call stepA_5 { input: item = item }791 call stepB_5 { input: files = [stepA_5.out] }792 793 output {794 File merged = stepB_5.merged795 }796}797 798 799### Response:800version 1.0801 802task stepA_5 {803 input {804 File item805 }806 command <<<807 echo ""Processing ~{item}""808 cp ~{item} out_5.txt809 >>>810 output {811 File out = ""out_5.txt""812 }813}814 815task stepB_5 {816 input {817 Array[File] files818 }819 command <<<820 cat ~{sep=' ' files} > merged_5.txt821 >>>822 output {823 File merged = ""merged_5.txt""824 }825}826 827workflow run_5 {828 input {829 Array[File] items830 }831 scatter (f in items) {832 call stepA_5 { input: item = f }833 }834 call stepB_5 { input: files = stepA_5.out }835 836 output {837 Array[File] stepA_outputs = stepA_5.out838 File merged = stepB_5.merged839 }840}841"842Add a scatter-gather loop for the task in the following WDL.,"version 1.0843 844task stepA_6 {845 input {846 File raw847 }848 command <<<849 echo ""Processing ~{raw}""850 cat ~{raw} out_6.txt851 >>>852 output {853 File out = ""out_6.txt""854 }855}856 857task stepB_6 {858 input {859 Array[File] files860 }861 command <<<862 cat ~{sep=' ' files} > merged_6.txt863 >>>864 output {865 File merged = ""merged_6.txt""866 }867}868 869workflow run_6 {870 input {871 File raw872 }873 call stepA_6 { input: raw = raw }874 call stepB_6 { input: files = [stepA_6.out] }875 876 output {877 File merged = stepB_6.merged878 }879}880","version 1.0881 882task stepA_6 {883 input {884 File raw885 }886 command <<<887 echo ""Processing ~{raw}""888 cat ~{raw} out_6.txt889 >>>890 output {891 File out = ""out_6.txt""892 }893}894 895task stepB_6 {896 input {897 Array[File] files898 }899 command <<<900 cat ~{sep=' ' files} > merged_6.txt901 >>>902 output {903 File merged = ""merged_6.txt""904 }905}906 907workflow run_6 {908 input {909 Array[File] raws910 }911 scatter (f in raws) {912 call stepA_6 { input: raw = f }913 }914 call stepB_6 { input: files = stepA_6.out }915 916 output {917 Array[File] stepA_outputs = stepA_6.out918 File merged = stepB_6.merged919 }920}921","Below is an instruction that describes a task. Write a response that appropriately completes the request.922 923### Instruction:924Add a scatter-gather loop for the task in the following WDL.925 926### Input:927version 1.0928 929task stepA_6 {930 input {931 File raw932 }933 command <<<934 echo ""Processing ~{raw}""935 cat ~{raw} out_6.txt936 >>>937 output {938 File out = ""out_6.txt""939 }940}941 942task stepB_6 {943 input {944 Array[File] files945 }946 command <<<947 cat ~{sep=' ' files} > merged_6.txt948 >>>949 output {950 File merged = ""merged_6.txt""951 }952}953 954workflow run_6 {955 input {956 File raw957 }958 call stepA_6 { input: raw = raw }959 call stepB_6 { input: files = [stepA_6.out] }960 961 output {962 File merged = stepB_6.merged963 }964}965 966 967### Response:968version 1.0969 970task stepA_6 {971 input {972 File raw973 }974 command <<<975 echo ""Processing ~{raw}""976 cat ~{raw} out_6.txt977 >>>978 output {979 File out = ""out_6.txt""980 }981}982 983task stepB_6 {984 input {985 Array[File] files986 }987 command <<<988 cat ~{sep=' ' files} > merged_6.txt989 >>>990 output {991 File merged = ""merged_6.txt""992 }993}994 995workflow run_6 {996 input {997 Array[File] raws998 }999 scatter (f in raws) {1000 call stepA_6 { input: raw = f }1001 }1002 call stepB_6 { input: files = stepA_6.out }1003 1004 output {1005 Array[File] stepA_outputs = stepA_6.out1006 File merged = stepB_6.merged1007 }1008}1009"1010Add a scatter-gather loop for the task in the following WDL.,"version 1.01011 1012task stepA_7 {1013 input {1014 File f1015 }1016 command <<<1017 echo ""Processing ~{f}""1018 cp ~{f} out_7.txt1019 >>>1020 output {1021 File out = ""out_7.txt""1022 }1023}1024 1025task stepB_7 {1026 input {1027 Array[File] files1028 }1029 command <<<1030 cat ~{sep=' ' files} > merged_7.txt1031 >>>1032 output {1033 File merged = ""merged_7.txt""1034 }1035}1036 1037workflow run_7 {1038 input {1039 File f1040 }1041 call stepA_7 { input: f = f }1042 call stepB_7 { input: files = [stepA_7.out] }1043 1044 output {1045 File merged = stepB_7.merged1046 }1047}1048","version 1.01049 1050task stepA_7 {1051 input {1052 File f1053 }1054 command <<<1055 echo ""Processing ~{f}""1056 cp ~{f} out_7.txt1057 >>>1058 output {1059 File out = ""out_7.txt""1060 }1061}1062 1063task stepB_7 {1064 input {1065 Array[File] files1066 }1067 command <<<1068 cat ~{sep=' ' files} > merged_7.txt1069 >>>1070 output {1071 File merged = ""merged_7.txt""1072 }1073}1074 1075workflow run_7 {1076 input {1077 Array[File] fs1078 }1079 scatter (f in fs) {1080 call stepA_7 { input: f = f }1081 }1082 call stepB_7 { input: files = stepA_7.out }1083 1084 output {1085 Array[File] stepA_outputs = stepA_7.out1086 File merged = stepB_7.merged1087 }1088}1089","Below is an instruction that describes a task. Write a response that appropriately completes the request.1090 1091### Instruction:1092Add a scatter-gather loop for the task in the following WDL.1093 1094### Input:1095version 1.01096 1097task stepA_7 {1098 input {1099 File f1100 }1101 command <<<1102 echo ""Processing ~{f}""1103 cp ~{f} out_7.txt1104 >>>1105 output {1106 File out = ""out_7.txt""1107 }1108}1109 1110task stepB_7 {1111 input {1112 Array[File] files1113 }1114 command <<<1115 cat ~{sep=' ' files} > merged_7.txt1116 >>>1117 output {1118 File merged = ""merged_7.txt""1119 }1120}1121 1122workflow run_7 {1123 input {1124 File f1125 }1126 call stepA_7 { input: f = f }1127 call stepB_7 { input: files = [stepA_7.out] }1128 1129 output {1130 File merged = stepB_7.merged1131 }1132}1133 1134 1135### Response:1136version 1.01137 1138task stepA_7 {1139 input {1140 File f1141 }1142 command <<<1143 echo ""Processing ~{f}""1144 cp ~{f} out_7.txt1145 >>>1146 output {1147 File out = ""out_7.txt""1148 }1149}1150 1151task stepB_7 {1152 input {1153 Array[File] files1154 }1155 command <<<1156 cat ~{sep=' ' files} > merged_7.txt1157 >>>1158 output {1159 File merged = ""merged_7.txt""1160 }1161}1162 1163workflow run_7 {1164 input {1165 Array[File] fs1166 }1167 scatter (f in fs) {1168 call stepA_7 { input: f = f }1169 }1170 call stepB_7 { input: files = stepA_7.out }1171 1172 output {1173 Array[File] stepA_outputs = stepA_7.out1174 File merged = stepB_7.merged1175 }1176}1177"1178Add a scatter-gather loop for the task in the following WDL.,"version 1.01179 1180task stepA_8 {1181 input {1182 File f1183 }1184 command <<<1185 echo ""Processing ~{f}""1186 cp ~{f} out_8.txt1187 >>>1188 output {1189 File out = ""out_8.txt""1190 }1191}1192 1193task stepB_8 {1194 input {1195 Array[File] files1196 }1197 command <<<1198 cat ~{sep=' ' files} > merged_8.txt1199 >>>1200 output {