Datasetpublic

IMI-HD/pathology-corpus-sample

This data set contains annotated samples of pathology nodes as described in our manuscript. They are part of the corpus that was used to train the models. We recommend using MedTator for viewing the files along with the dtd file published here.

sourceHugging Facecc-by-sa-4.0updated 1y agoView on Hugging Face

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root04.xml

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1<?xml version="1.0" encoding="UTF-8" ?>2<PathologyFindingsAnnotation>3<TEXT><![CDATA[NACHBERICHT :                       CD138 markiert die im Erstbericht beschriebenen atypischen Plasmazellen, deren Anteil am kernhaltigen Knochenmark ca. 60% beträgt.  Somit handelt es sich hier um Infiltrate einer plasmazellulären Neoplasie (Infiltratanteil: 60%), bei entsprechender klinischer Konstellation passend zu Infiltraten eines multiplen Myeloms.  Im Übrigen vergleiche Erstbericht]]></TEXT>4<TAGS>
5<Expression spans="36~41" text="CD138" id="E0"/>
6<MalignancySignal spans="84~94" text="atypischen" id="M0" malignancy="atypical"/>
7<CellType spans="95~107" text="Plasmazellen" id="Ce0" cell="plasma cell" isTumor="Not mentioned"/>
8<QuantitySignal spans="154~157" text="60%" id="Q0" quantity="60%"/>
9<CellAssociation spans="125~149" text="kernhaltigen Knochenmark" id="C0" type="nuclear bone marrow"/>
10<CellAssociation spans="198~208" text="Infiltrate" id="C1" type="other"/>
11<HematoDiagnosis spans="339~356" text="multiplen Myeloms" id="He0" diagnosis="Plasma cell myeloma"/>
12<CellAssociation spans="321~332" text="Infiltraten" id="C2" type="other"/>
13<HematoDiagnosis spans="215~241" text="plasmazellulären Neoplasie" id="He1" diagnosis="plasma cell neoplasms"/>
14<QuantitySignal spans="260~263" text="60%" id="Q1" quantity="60%"/>
15<PolaritySignal spans="174~189" text="handelt es sich" id="P0" polarity=""/>
16</TAGS>17<META/>18</PathologyFindingsAnnotation>