Datasetpublic

IMI-HD/pathology-corpus-sample

This data set contains annotated samples of pathology nodes as described in our manuscript. They are part of the corpus that was used to train the models. We recommend using MedTator for viewing the files along with the dtd file published here.

sourceHugging Facecc-by-sa-4.0updated 1y agoView on Hugging Face

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root02.xml

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1<?xml version="1.0" encoding="UTF-8" ?>
2<PathologyFindingsAnnotation>
3<TEXT><![CDATA[NACHBERICHT :                         Immunhistochemisch lassen sich hier im Interstitium kleine Gruppen von schwach CD20-positiven B-Zellen nachweisen. Diese Zellen zeigen eine Coexpression des PAX5, CD5, CD79und nukleär Cyclin D1. Diese Zellen sind negativ für CD3.  Zusammenfassend handelt es sich hier um hypoplastisches Knochenmark mit minimaler Infiltration durch das bei uns gesicherte Mantelzelllymphom (Infiltratanteil ca. 5%)]]></TEXT>
4<TAGS>
5<ExpressionSignal spans="109~116" text="schwach" id="Ex0" expression_intensity="weak"/>
6<Expression spans="117~121" text="CD20" id="E0"/>
7<PolaritySignal spans="122~131" text="positiven" id="P0" polarity="positive"/>
8<CellType spans="132~140" text="B-Zellen" id="Ce0" cell="B cell" isTumor="Not mentioned"/>
9<CellType spans="153~165" text="Diese Zellen" id="Ce1" cell="B cell" isTumor="Not mentioned"/>
10<PolaritySignal spans="178~190" text="Coexpression" id="P1" polarity="positive"/>
11<Expression spans="195~199" text="PAX5" id="E1"/>
12<Expression spans="201~204" text="CD5" id="E2"/>
13<Expression spans="206~210" text="CD79" id="E3"/>
14<Expression spans="225~234" text="Cyclin D1" id="E4"/>
15<CellType spans="236~248" text="Diese Zellen" id="Ce2" cell="B cell" isTumor="Not mentioned"/>
16<PolaritySignal spans="254~261" text="negativ" id="P2" polarity="negative"/>
17<Expression spans="266~269" text="CD3" id="E5"/>
18<PolaritySignal spans="288~303" text="handelt es sich" id="P3" polarity="positive"/>
19<CellAssociation spans="328~339" text="Knochenmark" id="C0" type="bone marrow"/>
20<CellAssociation spans="354~366" text="Infiltration" id="C1" type="other"/>
21<DiagnosisType spans="377~395" text="bei uns gesicherte" id="D0" type="pathology diagnosis"/>
22<HematoDiagnosis spans="396~413" text="Mantelzelllymphom" id="He0" diagnosis="mantle cell lymphoma"/>
23<QuantitySignal spans="435~437" text="5%" id="Q0" quantity="5%"/>
24</TAGS>
25<META/>
26</PathologyFindingsAnnotation>
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