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HLMCC/TCGA-PAAD

Dataset Card for TCGA-PAAD Clinical Data Dataset Summary The TCGA-PAAD (The Cancer Genome Atlas - Pancreatic Adenocarcinoma) clinical dataset contains clinical data related to pancreatic adenocarcinoma patients. This dataset is part of the broader TCGA project, aimed at providing comprehensive genomic and clinical data for various types of cancer. The clinical data includes information such as patient demographics, treatment history, survival data, and other… See the full description on the dataset page: https://huggingface.co/datasets/HLMCC/TCGA-PAAD.

sourceHugging Faceupdated 2y agoView on Hugging Face
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test.csv30 linesDownload Raw Back to root
1selected_normal_wgs,source_center,state,a260_a280_ratio,normal_tumor_genotype_snp_match,ribosomal_rna_28s_16s_ratio,rna_integrity_number,age_at_index,days_to_birth,ethnicity,gender,race,year_of_birth,age_at_diagnosis,classification_of_tumor,days_to_diagnosis,icd_10_code,last_known_disease_status,morphology,primary_diagnosis,prior_malignancy,prior_treatment,site_of_resection_or_biopsy,synchronous_malignancy,tissue_or_organ_of_origin,tumor_grade,year_of_diagnosis,treatment_or_therapy,alcohol_history,is_ffpe,composition,days_to_collection,days_to_sample_procurement,initial_weight,analyte_type,weight,portion_id,section_location,concentration,spectrophotometer_method,oct_embedded,preservation_method,no_matched_normal_low_pass_wgs,no_matched_normal_targeted_sequencing,no_matched_normal_wgs,no_matched_normal_wxs,selected_normal_low_pass_wgs,selected_normal_targeted_sequencing,selected_normal_wxs,creation_datetime,specimen_type,ajcc_staging_system_edition,intermediate_dimension,longest_dimension,shortest_dimension,cigarettes_per_day,pack_years_smoked,years_smoked,analyte_type_id,patient_id2true,23,released,1.75,Yes,1.32,7.7,66,-24381,not reported,male,white,1945,24381,not reported,0,C25.0,not reported,8500/3,"Infiltrating duct carcinoma, NOS",no,No,Head of pancreas,No,Head of pancreas,Not Reported,2011,,Yes,false,Not Reported,912,0,,,,,,,,,,,,,,,,,,Solid Tissue,7th,,,,,,,,193true,23,released,1.83,Yes,1.39,7.4,56,-20641,not reported,male,white,1956,20641,not reported,0,C25.0,not reported,8500/3,"Infiltrating duct carcinoma, NOS",no,No,Head of pancreas,No,Head of pancreas,Not Reported,2012,,Yes,false,Not Reported,495,0,80.0,,30.0,,,,,,,,,,,,,,,,7th,,,,,,,,154true,23,released,1.94,Yes,1.11,7.4,77,-28317,not reported,male,white,1934,28317,not reported,0,C25.0,not reported,8500/3,"Infiltrating duct carcinoma, NOS",no,No,Head of pancreas,No,Head of pancreas,Not Reported,2011,,Yes,false,Not Reported,397,0,240.0,,,,,,,,,,,,,,,,,,7th,,,,,,,,1355true,23,released,1.85,Yes,0.97,7.5,66,-24291,not hispanic or latino,female,white,1947,24291,not reported,0,C25.1,not reported,8500/3,"Infiltrating duct carcinoma, NOS",no,No,Body of pancreas,No,Body of pancreas,Not Reported,2013,,Yes,false,Not Reported,67,0,1140.0,,,,,,,,,,,,,,,,,,7th,,,,,,,,1756true,23,released,1.87,Yes,1.89,8.6,71,-26239,not hispanic or latino,male,white,1938,26239,not reported,0,C25.0,not reported,8500/3,"Infiltrating duct carcinoma, NOS",no,No,Head of pancreas,No,Head of pancreas,Not Reported,2009,yes,Yes,false,Not Reported,1790,0,,,,,,,,,,,,,,,,,,Solid Tissue,7th,,,,,,,,567,23,released,1.82,Yes,1.35,7.1,53,-19677,not hispanic or latino,male,white,1959,19677,not reported,0,C25.0,not reported,8140/3,"Adenocarcinoma, NOS",no,No,Head of pancreas,No,Head of pancreas,Not Reported,2012,,Yes,false,Not Reported,198,0,90.0,,,,,,,,,false,false,false,false,false,false,false,,,7th,,,,1.643835616438356,30.0,30.0,,768true,23,released,1.79,Yes,1.36,7.8,57,-20858,not hispanic or latino,female,white,1956,20858,not reported,0,C25.0,not reported,8500/3,"Infiltrating duct carcinoma, NOS",no,No,Head of pancreas,No,Head of pancreas,Not Reported,2013,yes,Yes,false,Not Reported,43,0,,,,,,,,,,,,,,,,,,Solid Tissue,7th,,,,,,,,1769true,23,released,1.88,Yes,1.16,7.1,71,-26085,not hispanic or latino,male,white,1936,26085,not reported,0,C25.0,not reported,8500/3,"Infiltrating duct carcinoma, NOS",no,No,Head of pancreas,No,Head of pancreas,Not Reported,2007,yes,Yes,false,Not Reported,2248,0,,,30.0,,,0.16,,,,,,,,,,,,Solid Tissue,7th,,,,1.36986301369863,25.0,25.0,,6010,23,released,1.88,Yes,1.13,7.1,50,-18315,not hispanic or latino,male,white,1963,18315,not reported,0,C25.2,not reported,8500/3,"Infiltrating duct carcinoma, NOS",no,No,Tail of pancreas,No,Tail of pancreas,Not Reported,2013,,Yes,false,Not Reported,79,0,240.0,,,,,,,,,false,false,false,false,false,false,false,,,7th,,,,3.780821917808219,69.0,23.0,,14711,,released,1.9,,,,85,-31074,not reported,female,not reported,1922,31074,not reported,0,C25.0,not reported,8500/3,"Infiltrating duct carcinoma, NOS",no,No,Head of pancreas,No,Head of pancreas,Not Reported,2007,,Not Reported,false,,,0,,DNA,,,,,UV Spec,No,,,,,,,,,,Solid Tissue,6th,,,0.4,,,,D,6912true,23,released,2.02,Yes,1.48,7.4,79,-29150,not hispanic or latino,female,white,1933,29150,not reported,0,C25.0,not reported,8140/3,"Adenocarcinoma, NOS",yes,No,Head of pancreas,No,Head of pancreas,Not Reported,2012,yes,Yes,false,Not Reported,105,0,330.0,,,,,,,,,,,,,,,,,,7th,,,,,,,,4613true,23,released,1.87,Yes,2.27,7.4,55,-20366,not hispanic or latino,female,white,1958,20366,not reported,0,C25.0,not reported,8140/3,"Adenocarcinoma, NOS",yes,No,Head of pancreas,No,Head of pancreas,Not Reported,2013,not reported,No,false,Not Reported,78,0,80.0,,,,,,,,,,,,,,,,,,7th,,,,0.821917808219178,15.0,,,11114true,23,released,1.84,Yes,1.24,7.5,85,-31319,not hispanic or latino,male,white,1926,31319,not reported,0,C25.2,not reported,8500/3,"Infiltrating duct carcinoma, NOS",yes,No,Tail of pancreas,No,Tail of pancreas,Not Reported,2011,,Yes,false,Not Reported,818,0,,,,,,,,,,,,,,,,,,Solid Tissue,7th,,,,,,,,6615false,23,released,,Yes,,,88,-32475,not hispanic or latino,female,white,1924,32475,not reported,0,C25.2,not reported,8140/3,"Adenocarcinoma, NOS",yes,No,Tail of pancreas,No,Tail of pancreas,Not Reported,2012,no,Yes,false,Not Reported,203,0,,,,,,,,,,false,false,false,false,false,false,,,,7th,,,,0.0547945205479452,1.0,,,7516true,,released,,Yes,1.45,7.9,60,-22148,not hispanic or latino,male,white,1947,22148,not reported,0,C25.0,not reported,8500/3,"Infiltrating duct carcinoma, NOS",no,No,Head of pancreas,No,Head of pancreas,Not Reported,2007,no,Yes,false,Not Reported,,0,,,,,,,,No,,,,,,,,,,,6th,0.8,1.5,0.3,,,,,11717,23,released,1.89,Yes,1.46,8.3,65,-23998,not hispanic or latino,male,white,1946,23998,not reported,0,C25.0,not reported,8500/3,"Infiltrating duct carcinoma, NOS",no,No,Head of pancreas,No,Head of pancreas,Not Reported,2011,,Yes,false,Not Reported,946,0,80.0,,,,,,,,,false,false,false,false,false,false,false,,,7th,,,,,,,,3518true,23,released,1.85,Yes,1.39,7.4,45,-16766,not hispanic or latino,male,black or african american,1965,16766,not reported,0,C25.0,not reported,8500/3,"Infiltrating duct carcinoma, NOS",no,No,Head of pancreas,No,Head of pancreas,Not Reported,2010,yes,Yes,false,Not Reported,1212,0,90.0,,30.0,,,,,,,,,,,,,,,,7th,,,,,,,,2419,23,released,1.79,Yes,1.35,7.7,67,-24576,not hispanic or latino,male,white,1946,24576,not reported,0,C25.0,not reported,8500/3,"Infiltrating duct carcinoma, NOS",no,No,Head of pancreas,No,Head of pancreas,Not Reported,2013,no,Yes,false,Not Reported,79,0,340.0,,30.0,,,,,,,false,false,false,false,false,false,false,,,7th,,,,,,,,14820,23,released,1.88,Yes,1.28,7.9,71,-26234,hispanic or latino,male,white,1937,26234,not reported,0,C25.0,not reported,8500/3,"Infiltrating duct carcinoma, NOS",no,No,Head of pancreas,No,Head of pancreas,Not Reported,2008,,Not Reported,false,Not Reported,2095,0,180.0,,,,,,,,,false,false,false,false,false,false,false,,,6th,,,,,,,,4121true,23,released,1.81,Yes,1.35,7.3,56,-20618,not reported,male,white,1955,20618,not reported,0,C25.0,not reported,8500/3,"Infiltrating duct carcinoma, NOS",no,No,Head of pancreas,No,Head of pancreas,Not Reported,2011,,Yes,false,Not Reported,1003,0,,,30.0,,,0.15,,,,,,,,,,,1393286400.0,Solid Tissue,7th,,,,1.643835616438356,30.0,,,1822,23,released,1.88,Yes,1.4,7.3,47,-17294,hispanic or latino,male,white,1965,17294,not reported,0,C25.0,not reported,8500/3,"Infiltrating duct carcinoma, NOS",no,No,Head of pancreas,No,Head of pancreas,Not Reported,2012,,No,false,Not Reported,574,0,120.0,,,,,,,,,false,false,false,false,false,false,false,,,7th,,,,,,,,3823true,23,released,1.91,Yes,1.33,7.0,77,-28434,not hispanic or latino,female,white,1936,28434,not reported,0,C25.0,not reported,8500/3,"Infiltrating duct carcinoma, NOS",no,No,Head of pancreas,No,Head of pancreas,Not Reported,2013,,No,false,Not Reported,84,0,40.0,,,,,,,,,,,,,,,,,,7th,,,,,,,,10924,23,released,1.91,Yes,1.2,7.0,75,-27600,not reported,male,white,1937,27600,not reported,0,C25.1,not reported,8500/3,"Infiltrating duct carcinoma, NOS",no,No,Body of pancreas,No,Body of pancreas,Not Reported,2012,,No,false,Not Reported,707,0,70.0,,30.0,,,,,,,false,false,false,false,false,false,false,,,7th,,,,,,,,225,23,released,1.84,Yes,1.15,7.2,74,-27082,not reported,male,white,1938,27082,not reported,0,C25.0,not reported,8500/3,"Infiltrating duct carcinoma, NOS",no,No,Head of pancreas,No,Head of pancreas,Not Reported,2012,,No,false,Not Reported,495,0,90.0,,30.0,,,0.16,,,,false,false,false,false,false,false,false,,,7th,,,,1.643835616438356,30.0,,,1626,,released,,Yes,1.41,7.1,54,-19839,not hispanic or latino,female,white,1958,19839,not reported,0,C25.0,not reported,8500/3,"Infiltrating duct carcinoma, NOS",no,No,Head of pancreas,No,Head of pancreas,Not Reported,2012,,Not Reported,false,Not Reported,,0,,,,,,,,No,,false,false,false,false,false,false,false,,,7th,0.8,0.9,0.3,,,,,9827,23,released,1.91,Yes,1.3,7.9,54,-19904,not hispanic or latino,male,white,1958,19904,not reported,0,C25.0,not reported,8500/3,"Infiltrating duct carcinoma, NOS",no,No,Head of pancreas,No,Head of pancreas,Not Reported,2012,yes,Yes,false,Not Reported,76,0,760.0,,,,,,,,,false,false,false,false,false,false,false,,,7th,,,,1.36986301369863,25.0,25.0,,5128false,23,released,1.84,Yes,1.89,7.4,55,-20316,not reported,female,white,1956,20316,not reported,0,C25.0,not reported,8140/3,"Adenocarcinoma, NOS",no,No,Head of pancreas,No,Head of pancreas,Not Reported,2011,yes,Yes,false,Not Reported,774,0,90.0,,30.0,,,,,,,false,false,false,false,false,false,false,,,7th,,,,2.3013698630136985,42.0,31.0,,929false,23,released,1.85,Yes,1.47,7.8,48,-17649,not hispanic or latino,male,asian,1964,17649,not reported,0,C25.0,not reported,8480/3,Mucinous adenocarcinoma,no,No,Head of pancreas,No,Head of pancreas,Not Reported,2012,,Yes,false,Not Reported,250,0,1350.0,,,,,,,,,false,false,false,false,false,false,false,,,7th,,,,1.095890410958904,20.0,,,5530