GangCaoLab/FISH_spots
FISH_spots Dataset The manually verified in situ hybridization fluorescence images and point coordinate dataset. This dataset contains images and annotations for the task of single-molecule fluorescence in situ hybridization (FISH) spot detection, supporting 2D, 3D, and simulated noisy data. The structure is designed for deep learning model development, training, and evaluation. Directory Structure FISH_spots/ ├── 2d/ │ ├── csv/ │ ├── image/ │ ├── image_raw/ │ └──… See the full description on the dataset page: https://huggingface.co/datasets/GangCaoLab/FISH_spots.
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1image_path,coordinate_path,simulated,source,num_spots2image/noise_300_simfish_35.tif,csv/noise_300_simfish_35.csv,True,simfish,4883image/noise_2300_simfish_58.tif,csv/noise_2300_simfish_58.csv,True,simfish,5274image/noise_6300_simfish_112.tif,csv/noise_6300_simfish_112.csv,True,simfish,5165image/noise_6300_simfish_139.tif,csv/noise_6300_simfish_139.csv,True,simfish,5096image/noise_2300_simfish_77.tif,csv/noise_2300_simfish_77.csv,True,simfish,4937image/noise_300_simfish_46.tif,csv/noise_300_simfish_46.csv,True,simfish,4878image/noise_15300_simfish_240.tif,csv/noise_15300_simfish_240.csv,True,simfish,5029image/noise_6300_simfish_127.tif,csv/noise_6300_simfish_127.csv,True,simfish,49510image/noise_300_simfish_41.tif,csv/noise_300_simfish_41.csv,True,simfish,50911image/noise_300_simfish_19.tif,csv/noise_300_simfish_19.csv,True,simfish,47112image/noise_300_simfish_7.tif,csv/noise_300_simfish_7.csv,True,simfish,51313image/noise_15300_simfish_249.tif,csv/noise_15300_simfish_249.csv,True,simfish,47114image/noise_10300_simfish_153.tif,csv/noise_10300_simfish_153.csv,True,simfish,48215image/noise_300_simfish_40.tif,csv/noise_300_simfish_40.csv,True,simfish,48716image/noise_20300_simfish_271.tif,csv/noise_20300_simfish_271.csv,True,simfish,48317image/noise_2300_simfish_78.tif,csv/noise_2300_simfish_78.csv,True,simfish,47318image/noise_300_simfish_33.tif,csv/noise_300_simfish_33.csv,True,simfish,51019image/noise_2300_simfish_51.tif,csv/noise_2300_simfish_51.csv,True,simfish,50820image/noise_6300_simfish_126.tif,csv/noise_6300_simfish_126.csv,True,simfish,51521image/noise_2300_simfish_67.tif,csv/noise_2300_simfish_67.csv,True,simfish,51322image/noise_15300_simfish_205.tif,csv/noise_15300_simfish_205.csv,True,simfish,50023image/noise_300_simfish_29.tif,csv/noise_300_simfish_29.csv,True,simfish,47624image/noise_10300_simfish_192.tif,csv/noise_10300_simfish_192.csv,True,simfish,51825image/noise_15300_simfish_209.tif,csv/noise_15300_simfish_209.csv,True,simfish,51426image/noise_15300_simfish_219.tif,csv/noise_15300_simfish_219.csv,True,simfish,52327image/noise_6300_simfish_109.tif,csv/noise_6300_simfish_109.csv,True,simfish,47628image/noise_2300_simfish_92.tif,csv/noise_2300_simfish_92.csv,True,simfish,48329image/noise_20300_simfish_282.tif,csv/noise_20300_simfish_282.csv,True,simfish,48630image/noise_6300_simfish_123.tif,csv/noise_6300_simfish_123.csv,True,simfish,49431image/noise_20300_simfish_265.tif,csv/noise_20300_simfish_265.csv,True,simfish,52932image/noise_20300_simfish_260.tif,csv/noise_20300_simfish_260.csv,True,simfish,49633image/noise_6300_simfish_132.tif,csv/noise_6300_simfish_132.csv,True,simfish,52334image/noise_6300_simfish_130.tif,csv/noise_6300_simfish_130.csv,True,simfish,49935image/noise_6300_simfish_120.tif,csv/noise_6300_simfish_120.csv,True,simfish,51936image/noise_10300_simfish_196.tif,csv/noise_10300_simfish_196.csv,True,simfish,48737image/noise_20300_simfish_293.tif,csv/noise_20300_simfish_293.csv,True,simfish,51638image/noise_20300_simfish_297.tif,csv/noise_20300_simfish_297.csv,True,simfish,48939image/noise_6300_simfish_143.tif,csv/noise_6300_simfish_143.csv,True,simfish,53840image/noise_10300_simfish_152.tif,csv/noise_10300_simfish_152.csv,True,simfish,49141image/noise_2300_simfish_86.tif,csv/noise_2300_simfish_86.csv,True,simfish,52142image/noise_6300_simfish_117.tif,csv/noise_6300_simfish_117.csv,True,simfish,49143image/noise_15300_simfish_232.tif,csv/noise_15300_simfish_232.csv,True,simfish,52144image/noise_10300_simfish_156.tif,csv/noise_10300_simfish_156.csv,True,simfish,50745image/noise_10300_simfish_199.tif,csv/noise_10300_simfish_199.csv,True,simfish,49146image/noise_15300_simfish_231.tif,csv/noise_15300_simfish_231.csv,True,simfish,51647image/noise_300_simfish_18.tif,csv/noise_300_simfish_18.csv,True,simfish,48648image/noise_20300_simfish_283.tif,csv/noise_20300_simfish_283.csv,True,simfish,48849image/noise_300_simfish_5.tif,csv/noise_300_simfish_5.csv,True,simfish,51350image/noise_10300_simfish_169.tif,csv/noise_10300_simfish_169.csv,True,simfish,52151image/noise_300_simfish_30.tif,csv/noise_300_simfish_30.csv,True,simfish,50552image/noise_15300_simfish_220.tif,csv/noise_15300_simfish_220.csv,True,simfish,48053image/noise_20300_simfish_259.tif,csv/noise_20300_simfish_259.csv,True,simfish,51554image/noise_2300_simfish_93.tif,csv/noise_2300_simfish_93.csv,True,simfish,50855image/noise_300_simfish_2.tif,csv/noise_300_simfish_2.csv,True,simfish,50756image/noise_10300_simfish_179.tif,csv/noise_10300_simfish_179.csv,True,simfish,51457image/noise_6300_simfish_101.tif,csv/noise_6300_simfish_101.csv,True,simfish,49858image/noise_2300_simfish_62.tif,csv/noise_2300_simfish_62.csv,True,simfish,47059image/noise_300_simfish_27.tif,csv/noise_300_simfish_27.csv,True,simfish,52260image/noise_10300_simfish_180.tif,csv/noise_10300_simfish_180.csv,True,simfish,53561image/noise_15300_simfish_242.tif,csv/noise_15300_simfish_242.csv,True,simfish,49662image/noise_15300_simfish_221.tif,csv/noise_15300_simfis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