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Anurag1734/cuda-error-resolution-analysis

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1[2  {3    "post_stream": {4      "posts": [5        {6          "id": 146102,7          "name": "Cagatay Yildiz",8          "username": "cagatayyildiz",9          "avatar_template": "/user_avatar/discuss.pytorch.org/cagatayyildiz/{size}/17682_2.png",10          "created_at": "2019-11-13T20:40:34.298Z",11          "cooked": "<p>I’m having a segmentation fault error when I try to invert a 150x150 matrix, as simple as this:</p>\n<pre><code class=\"lang-auto\">J = torch.randn([20,150])\ntorch.inverse(J.t()@J)\n</code></pre>\n<p>I didn’t try to find out the exact threshold but for example, 120x120 inversion is fine.</p>\n<p>Also, I am having this issue on my macOS Sierra (10.12.6) with Python 3.7.3, Clang 4.0.1 and torch 1.3.0. My Ubuntu machine with Python 3.7.4, GCC 7.3.0 and 1.1.0 has no problem inverting even 3k-3k matrices.</p>\n<p>Any suggestions?<br>\nThanks!</p>",12          "post_number": 1,13          "post_type": 1,14          "posts_count": 4,15          "updated_at": "2019-11-13T20:40:34.298Z",16          "reply_count": 1,17          "reply_to_post_number": null,18          "quote_count": 0,19          "incoming_link_count": 177,20          "reads": 14,21          "readers_count": 13,22          "score": 892.8,23          "yours": false,24          "topic_id": 60899,25          "topic_slug": "segmentation-fault-when-matrix-inverted",26          "display_username": "Cagatay Yildiz",27          "primary_group_name": null,28          "flair_name": null,29          "flair_url": null,30          "flair_bg_color": null,31          "flair_color": null,32          "flair_group_id": null,33          "badges_granted": [],34          "version": 1,35          "can_edit": false,36          "can_delete": false,37          "can_recover": false,38          "can_see_hidden_post": false,39          "can_wiki": false,40          "read": true,41          "user_title": null,42          "bookmarked": false,43          "actions_summary": [],44          "moderator": false,45          "admin": false,46          "staff": false,47          "user_id": 24323,48          "hidden": false,49          "trust_level": 1,50          "deleted_at": null,51          "user_deleted": false,52          "edit_reason": null,53          "can_view_edit_history": true,54          "wiki": false,55          "post_url": "/t/segmentation-fault-when-matrix-inverted/60899/1",56          "can_accept_answer": false,57          "can_unaccept_answer": false,58          "accepted_answer": false,59          "topic_accepted_answer": true,60          "can_vote": false61        },62        {63          "id": 146106,64          "name": "Alban D",65          "username": "albanD",66          "avatar_template": "/user_avatar/discuss.pytorch.org/alband/{size}/215_2.png",67          "created_at": "2019-11-13T20:47:53.402Z",68          "cooked": "<p>Hi,</p>\n<p>I cannot reproduce this locally with python 3.7 on macos.<br>\nDo you know where the segfaults happen exactly? (using gdb or similar tools)<br>\nAlso, do you see the same problem with <code>torch.inverse(J.t().clone()@J)</code>?<br>\nAlso how did you installed pytorch?</p>",69          "post_number": 2,70          "post_type": 1,71          "posts_count": 4,72          "updated_at": "2019-11-13T20:47:53.402Z",73          "reply_count": 1,74          "reply_to_post_number": null,75          "quote_count": 0,76          "incoming_link_count": 5,77          "reads": 13,78          "readers_count": 12,79          "score": 32.6,80          "yours": false,81          "topic_id": 60899,82          "topic_slug": "segmentation-fault-when-matrix-inverted",83          "display_username": "Alban D",84          "primary_group_name": null,85          "flair_name": null,86          "flair_url": null,87          "flair_bg_color": null,88          "flair_color": null,89          "flair_group_id": null,90          "badges_granted": [],91          "version": 1,92          "can_edit": false,93          "can_delete": false,94          "can_recover": false,95          "can_see_hidden_post": false,96          "can_wiki": false,97          "read": true,98          "user_title": "",99          "bookmarked": false,100          "actions_summary": [],101          "moderator": true,102          "admin": true,103          "staff": true,104          "user_id": 211,105          "hidden": false,106          "trust_level": 4,107          "deleted_at": null,108          "user_deleted": false,109          "edit_reason": null,110          "can_view_edit_history": true,111          "wiki": false,112          "post_url": "/t/segmentation-fault-when-matrix-inverted/60899/2",113          "can_accept_answer": false,114          "can_unaccept_answer": false,115          "accepted_answer": false,116          "topic_accepted_answer": true117        },118        {119          "id": 146143,120          "name": "Yaroslav Bulatov",121          "username": "Yaroslav_Bulatov",122          "avatar_template": "/user_avatar/discuss.pytorch.org/yaroslav_bulatov/{size}/7017_2.png",123          "created_at": "2019-11-14T02:13:24.691Z",124          "cooked": "<p>Singular matrices expose bugs in numalg algorithms…</p>\n<p>Wondering if your call is going through MKL under the hood. I’ve seen crashes in that library for singular matrices which <a href=\"https://software.intel.com/en-us/forums/intel-distribution-for-python/topic/628049\" rel=\"nofollow noopener\">get fixed</a> by setting OMP_NUM_THREADS=1</p>\n<p>Dump utility below could be useful to get repro – save the matrix before the crash. Then you can upload the file and wrap it into easy to run repro like <a href=\"https://github.com/pytorch/pytorch/issues/25978#issue-492018796\" rel=\"nofollow noopener\">here</a></p>\n<pre><code class=\"lang-auto\">def dump(result, fname):\n    \"\"\"Save result to file. Load as np.genfromtxt(fname). \"\"\"\n    result = to_numpy(result)\n    if result.shape == ():  # savetxt has problems with scalars\n        result = np.expand_dims(result, 0)\n    location = fname\n    # special handling for integer datatypes\n    if (\n            result.dtype == np.uint8 or result.dtype == np.int8 or\n            result.dtype == np.uint16 or result.dtype == np.int16 or\n            result.dtype == np.uint32 or result.dtype == np.int32 or\n            result.dtype == np.uint64 or result.dtype == np.int64\n    ):\n        np.savetxt(location, X=result, fmt=\"%d\", delimiter=',')\n    else:\n        np.savetxt(location, X=result, delimiter=',')\n    print(\"Dumping to\", location)\n</code></pre>",125          "post_number": 3,126          "post_type": 1,127          "posts_count": 4,128          "updated_at": "2019-11-14T17:14:35.428Z",129          "reply_count": 0,130          "reply_to_post_number": null,131          "quote_count": 0,132          "incoming_link_count": 6,133          "reads": 9,134          "readers_count": 8,135          "score": 31.8,136          "yours": false,137          "topic_id": 60899,138          "topic_slug": "segmentation-fault-when-matrix-inverted",139          "display_username": "Yaroslav Bulatov",140          "primary_group_name": null,141          "flair_name": null,142          "flair_url": null,143          "flair_bg_color": null,144          "flair_color": null,145          "flair_group_id": null,146          "badges_granted": [],147          "version": 2,148          "can_edit": false,149          "can_delete": false,150          "can_recover": false,151          "can_see_hidden_post": false,152          "can_wiki": false,153          "link_counts": [154            {155              "url": "https://software.intel.com/en-us/forums/intel-distribution-for-python/topic/628049",156              "internal": false,157              "reflection": false,158              "clicks": 5159            },160            {161              "url": "https://github.com/pytorch/pytorch/issues/25978#issue-492018796",162              "internal": false,163              "reflection": false,164              "title": "Provide a way to select SVD algorithm in PyTorch? · Issue #25978 · pytorch/pytorch · GitHub",165              "clicks": 2166            }167          ],168          "read": true,169          "user_title": null,170          "bookmarked": false,171          "actions_summary": [],172          "moderator": false,173          "admin": false,174          "staff": false,175          "user_id": 11965,176          "hidden": false,177          "trust_level": 2,178          "deleted_at": null,179          "user_deleted": false,180          "edit_reason": null,181          "can_view_edit_history": true,182          "wiki": false,183          "post_url": "/t/segmentation-fault-when-matrix-inverted/60899/3",184          "can_accept_answer": false,185          "can_unaccept_answer": false,186          "accepted_answer": false,187          "topic_accepted_answer": true188        },189        {190          "id": 174715,191          "name": "Cagatay Yildiz",192          "username": "cagatayyildiz",193          "avatar_template": "/user_avatar/discuss.pytorch.org/cagatayyildiz/{size}/17682_2.png",194          "created_at": "2020-03-17T16:15:43.623Z",195          "cooked": "<p>I’m using Anaconda3 on my computer. I don’t really remember how I installed torch but I anyways uninstalled it. When I re-installed it via <code>pip</code>, the error persisted. I once again uninstalled and installed this time via <code>conda</code>. Now, everything seems fine.</p>\n<aside class=\"quote no-group\" data-username=\"cagatayyildiz\" data-post=\"1\" data-topic=\"60899\">\n<div class=\"title\">\n<div class=\"quote-controls\"></div>\n<img loading=\"lazy\" alt=\"\" width=\"24\" height=\"24\" src=\"https://discuss.pytorch.org/user_avatar/discuss.pytorch.org/cagatayyildiz/48/17682_2.png\" class=\"avatar\"> cagatayyildiz:</div>\n<blockquote>\n<p>torch.inverse(J.t()<span class=\"mention\">@J</span>)</p>\n</blockquote>\n</aside>",196          "post_number": 4,197          "post_type": 1,198          "posts_count": 4,199          "updated_at": "2020-03-17T16:15:51.239Z",200          "reply_count": 0,201          "reply_to_post_number": 2,202          "quote_count": 1,203          "incoming_link_count": 4,204          "reads": 6,205          "readers_count": 5,206          "score": 21.2,207          "yours": false,208          "topic_id": 60899,209          "topic_slug": "segmentation-fault-when-matrix-inverted",210          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I don’t really remember how I installed torch but I anyways uninstalled it. When I re-installed it via pip, the error persisted. I once again uninstalled and installed this time via conda. Now, everything seems fine."637    },638    "can_vote": false,639    "vote_count": 0,640    "user_voted": false,641    "discourse_zendesk_plugin_zendesk_id": null,642    "discourse_zendesk_plugin_zendesk_url": "https://your-url.zendesk.com/agent/tickets/",643    "details": {644      "can_edit": false,645      "notification_level": 1,646      "participants": [647        {648          "id": 24323,649          "username": "cagatayyildiz",650          "name": "Cagatay Yildiz",651          "avatar_template": "/user_avatar/discuss.pytorch.org/cagatayyildiz/{size}/17682_2.png",652          "post_count": 2,653          "primary_group_name": null,654          "flair_name": null,655          "flair_url": null,656          "flair_color": null,657          "flair_bg_color": null,658          "flair_group_id": null,659          "trust_level": 1660        },661        {662          "id": 211,663          "username": "albanD",664          "name": "Alban D",665          "avatar_template": 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"avatar_template": "/letter_avatar_proxy/v4/letter/d/d78d45/{size}.png",1181          "created_at": "2020-03-16T17:24:19.317Z",1182          "cooked": "<p>Hello,<br>\nA model has time-series structure.<br>\nSo, I’ve split each time-step into each gpu, due to insufficiency of gpu memory.</p>\n<p>But I got an error when calling loss.backward():</p>\n<pre><code class=\"lang-auto\">File \"/home/xxx/.local/lib/python3.7/site-packages/torch/autograd/__init__.py\", line 99, in backward\n    allow_unreachable=True)  # allow_unreachable flag\nRuntimeError: Function CatBackward returned an invalid gradient at index 1 - expected device cuda:2 but got cuda:0\n</code></pre>\n<p>Please find the minimum code below:</p>\n<pre><code class=\"lang-auto\">    self.config['DEVICE_ALL'] = [0, 2, 3]\n    self.backbone = UNet(n_channels=config['IN_LEN']*3 - 2)\n    self.geo = nn.Parameter(data=torch.randn(1, 4, self.h, self.w), requires_grad=True)\n    self.outConv = nn.Conv2d(68, 1, kernel_size=1)\n    self.output_time_length = 3\n\n    def forward(self, input):\n\n        outputs = []\n        cur_input = input\n        cur_state = self.get_state(...)\n\n        for i in range(self.output_time_length):\n            \n            dev = self.config['DEVICE_ALL'][i]\n            cur_input = cur_input.cuda(dev)\n            cur_state = cur_state.cuda(dev)\n            x = torch.cat([cur_input, cur_state], 1).cuda(dev)\n\n            self.backbone = self.backbone.cuda(dev)\n            x = self.backbone(x).cuda(dev)\n\n            geo = self.geo.expand(x.shape[0], -1, -1, -1).cuda(dev)\n            x = torch.cat([x, geo], 1).cuda(dev)\n\n            self.outConv = self.outConv.cuda(dev)\n            x = self.outConv(x).cuda(dev)\n\n            outputs.append(x)\n            cur_input = torch.cat([cur_input[:, 1:], x], 1)\n            cur_state = self.get_next_state(...)\n\n        return torch.cat(outputs, 1).cuda(dev)\n</code></pre>\n<p>Thanks in advance!</p>",1183          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