CoolFace
Apppublic

saim1309/Cell_Segmentation

sourceHugging Facemitupdated 7mo agoView on Hugging Face
0likes
NormalizeImage.cpython-312.pyc27 linesDownload Raw Back to root
12�_ghh���ddlZddlmZddlmZddlmZddlm	Z	ddl3mZmZm
Z
gd�ZGd�d	e�ZGd4�de	�ZexZZy)�N)�exposure)�KeysCollection)�	Transform)�MapTransform)�Dict�Hashable�Mapping)�CustomNormalizeImage�CustomNormalizeImageD�CustomNormalizeImageDict�CustomNormalizeImagedc�x�eZdZdZddgdfd�Zdejfd�Zdejdejfd	�Zy5)r6zNormalize the image.rg�X@Fc�0�|\|_|_||_y�N)�lower�upper�channel_wise)�self�percentilesrs   �M/media/ammar/MLB/Saim/Malaria/train_tools/data_utils/custom/NormalizeImage.py�__init__zCustomNormalizeImage.__init__s��!,���7�D�J�(����returnc��|tj|�}tj||j|jg�}tj||d|dfd��}|jtj�S)Nr��uint8)�in_range�	out_range)	�np�nonzero�8percentilerrr�rescale_intensity�astyper)r�img�
non_zero_valsr�img_norms     r�9_normalizezCustomNormalizeImage._normalizesj���B�J�J�s�O�,�
��m�m�M�D�J�J��1011�3K�L���-�-��;�q�>�;�q�>�:�g�12�����r�x�x�(�(rr$c�x�|jr�tj|jtj��}t|jd�D]N}|dd�dd�|f}t
|tj|��dkDs�4|j|�|dd�dd�|f<�P|}|S|j|�}|S)N)�dtype�����r)	rr�zeros�shaper�range�lenr r')rr$�pre_img_data�i�
img_channel_is     r�__call__zCustomNormalizeImage.__call__#s�������8�8�C�I�I�R�X�X�>�L��3�9�9�R�=�)�
K�� #�A�q�!�G��
��}�R�Z�Z�
�%>�?�@�1�D�,0�O�O�M�,J�L��A�q��)�	
K��C�13�14��/�/�#�&�C��15rN)	�__name__�16__module__�__qualname__�__doc__rr�ndarrayr'r2�rrr17r18s>���$%�t�9�5�)�)����)��B�J�J��2�:�:�rr19c���eZdZdZddgddfdededef�fd�
Zd	eee	jfd20eee	jffd�Z�xZ
S)r
z*Dictionary-based wrapper of NormalizeImager�cF�keysr�allow_missing_keysc�P��tt|�||�t||�|_yr)�superrrr2122normalizer)rr;rrr<�	__class__s     �rrzCustomNormalizeImaged.__init__7s&���	�#�T�3�D�:L�M�.�{�L�I��r�datarc�l�t|�}|jD]}|j||�||<�|Sr)�dictr;r?)rrA�d�keys    rr2zCustomNormalizeImaged.__call__As=��
��J���9�9�	-�C��_�_�Q�s�V�,�A�c�F�	-��r)r3r4r5r6r�boolrr	rrr7rr2�
__classcell__)r@s@rr
r
4sk���4�23��G�"�#(�J��J��	J�24!�J�	��H�b�j�j�0�1�	�	
�h��2526�"�	#�	rr
)�numpyr�skimager�monai.configr�monai.transforms.transformr�monai.transforms.composer�typingrrr	�__all__r27r
rrr8rr�<module>rOsI����'�0�1�*�*����9��B�L��24I�H��0r