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esachdev12/CLINOVA

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1/Users/abhimanraj/projects/HACKNSOLVE-RL/gradio_app.py:1231: UserWarning: The parameters have been moved from the Blocks constructor to the launch() method in Gradio 6.0: theme, css. Please pass these parameters to launch() instead.2  with gr.Blocks(theme=theme, title="GenomIQ — Scientific Discovery Lab", css=CUSTOM_CSS) as demo:3[AI Scientist] Loaded HF_TOKEN from .env4INFO:     Started server process [87202]5INFO:     Waiting for application startup.62026-04-08 00:36:49,904 - GenomIQEnv - INFO - ENV INIT | Domain=gene_expression, Task=single_regulator, MaxSteps=50, Seed=4272026-04-08 00:36:49,905 - GenomIQEnv - INFO -   Hidden pattern: SINGLE regulator → LDHA (idx=12)82026-04-08 00:36:49,905 - GenomIQEnv - INFO - ENV RESET | Episode #092026-04-08 00:36:49,905 - GenomIQEnv - INFO -   Matrix shape: (20, 1) (genes × conditions)102026-04-08 00:36:49,905 - GenomIQEnv - INFO -   Gene count: 20, True target: ['LDHA']112026-04-08 00:36:49,906 - GenomIQEnv - INFO - ENV INIT | Domain=gene_expression, Task=coexpression_cluster, MaxSteps=50, Seed=42122026-04-08 00:36:49,906 - GenomIQEnv - INFO -   Hidden pattern: CLUSTER → ['STAT3', 'XPA', 'MUTYH'] (indices=[6, 24, 25])132026-04-08 00:36:49,906 - GenomIQEnv - INFO - ENV RESET | Episode #0142026-04-08 00:36:49,906 - GenomIQEnv - INFO -   Matrix shape: (50, 3) (genes × conditions)152026-04-08 00:36:49,906 - GenomIQEnv - INFO -   Gene count: 50, True target: ['STAT3', 'XPA', 'MUTYH']162026-04-08 00:36:49,907 - GenomIQEnv - INFO - ENV INIT | Domain=gene_expression, Task=interaction_effect, MaxSteps=50, Seed=42172026-04-08 00:36:49,907 - GenomIQEnv - INFO -   Hidden pattern: INTERACTION pair → ['IL10', 'SERPINE1'] (indices=[85, 95])182026-04-08 00:36:49,907 - GenomIQEnv - INFO - ENV RESET | Episode #0192026-04-08 00:36:49,907 - GenomIQEnv - INFO -   Matrix shape: (100, 5) (genes × conditions)202026-04-08 00:36:49,907 - GenomIQEnv - INFO -   Gene count: 100, True target: ['IL10', 'SERPINE1']212026-04-08 00:36:49,907 - GenomIQEnv - INFO - ENV INIT | Domain=gene_expression, Task=cancer_gene_panel, MaxSteps=50, Seed=42222026-04-08 00:36:49,907 - GenomIQEnv - INFO -   Hidden pattern: SINGLE regulator → ACC1 (idx=20)232026-04-08 00:36:49,908 - GenomIQEnv - INFO - ENV RESET | Episode #0242026-04-08 00:36:49,908 - GenomIQEnv - INFO -   Matrix shape: (30, 2) (genes × conditions)252026-04-08 00:36:49,908 - GenomIQEnv - INFO -   Gene count: 30, True target: ['ACC1']262026-04-08 00:36:49,908 - GenomIQEnv - INFO - ENV INIT | Domain=gene_expression, Task=rare_disease_cluster, MaxSteps=50, Seed=42272026-04-08 00:36:49,908 - GenomIQEnv - INFO -   Hidden pattern: CLUSTER → ['JAK2', 'CASP3', 'NBN'] (indices=[6, 25, 28])282026-04-08 00:36:49,908 - GenomIQEnv - INFO - ENV RESET | Episode #0292026-04-08 00:36:49,908 - GenomIQEnv - INFO -   Matrix shape: (60, 4) (genes × conditions)302026-04-08 00:36:49,908 - GenomIQEnv - INFO -   Gene count: 60, True target: ['JAK2', 'CASP3', 'NBN']312026-04-08 00:36:49,909 - GenomIQEnv - INFO - ENV INIT | Domain=gene_expression, Task=polygenic_interaction, MaxSteps=50, Seed=42322026-04-08 00:36:49,909 - GenomIQEnv - INFO -   Hidden pattern: INTERACTION pair → ['CCNB1', 'DNMT3A'] (indices=[51, 74])332026-04-08 00:36:49,909 - GenomIQEnv - INFO - ENV RESET | Episode #0342026-04-08 00:36:49,909 - GenomIQEnv - INFO -   Matrix shape: (120, 6) (genes × conditions)352026-04-08 00:36:49,909 - GenomIQEnv - INFO -   Gene count: 120, True target: ['CCNB1', 'DNMT3A']362026-04-08 00:36:49,910 - GenomIQEnv - INFO - ENV INIT | Domain=gene_expression, Task=drug_affinity, MaxSteps=50, Seed=42372026-04-08 00:36:49,910 - GenomIQEnv - INFO -   Hidden pattern: SINGLE regulator → GLUT1 (idx=26)382026-04-08 00:36:49,910 - GenomIQEnv - INFO - ENV RESET | Episode #0392026-04-08 00:36:49,910 - GenomIQEnv - INFO -   Matrix shape: (40, 1) (genes × conditions)402026-04-08 00:36:49,910 - GenomIQEnv - INFO -   Gene count: 40, True target: ['GLUT1']412026-04-08 00:36:49,911 - GenomIQEnv - INFO - ENV INIT | Domain=gene_expression, Task=multi_target_screen, MaxSteps=50, Seed=42422026-04-08 00:36:49,911 - GenomIQEnv - INFO -   Hidden pattern: CLUSTER → ['DVL1', 'DOT1L', 'ASNS'] (indices=[13, 58, 61])432026-04-08 00:36:49,911 - GenomIQEnv - INFO - ENV RESET | Episode #0442026-04-08 00:36:49,911 - GenomIQEnv - INFO -   Matrix shape: (80, 3) (genes × conditions)452026-04-08 00:36:49,911 - GenomIQEnv - INFO -   Gene count: 80, True target: ['DVL1', 'DOT1L', 'ASNS']462026-04-08 00:36:49,911 - GenomIQEnv - INFO - ENV INIT | Domain=gene_expression, Task=synergy_detection, MaxSteps=50, Seed=42472026-04-08 00:36:49,911 - GenomIQEnv - INFO -   Hidden pattern: INTERACTION pair → ['CDK6', 'SERPINE1'] (indices=[43, 95])482026-04-08 00:36:49,911 - GenomIQEnv - INFO - ENV RESET | Episode #0492026-04-08 00:36:49,911 - GenomIQEnv - INFO -   Matrix shape: (100, 4) (genes × conditions)502026-04-08 00:36:49,911 - GenomIQEnv - INFO -   Gene count: 100, True target: ['CDK6', 'SERPINE1']512026-04-08 00:36:49,912 - GenomIQEnv - INFO - ENV INIT | Domain=gene_expression, Task=single_tf_binding, MaxSteps=50, Seed=42522026-04-08 00:36:49,912 - GenomIQEnv - INFO -   Hidden pattern: SINGLE regulator → CDH2 (idx=19)532026-04-08 00:36:49,912 - GenomIQEnv - INFO - ENV RESET | Episode #0542026-04-08 00:36:49,912 - GenomIQEnv - INFO -   Matrix shape: (25, 2) (genes × conditions)552026-04-08 00:36:49,912 - GenomIQEnv - INFO -   Gene count: 25, True target: ['CDH2']562026-04-08 00:36:49,913 - GenomIQEnv - INFO - ENV INIT | Domain=gene_expression, Task=regulatory_cascade, MaxSteps=50, Seed=42572026-04-08 00:36:49,913 - GenomIQEnv - INFO -   Hidden pattern: CLUSTER → ['STAT3', 'XPA', 'MUTYH'] (indices=[6, 24, 25])582026-04-08 00:36:49,913 - GenomIQEnv - INFO - ENV RESET | Episode #0592026-04-08 00:36:49,913 - GenomIQEnv - INFO -   Matrix shape: (50, 3) (genes × conditions)602026-04-08 00:36:49,913 - GenomIQEnv - INFO -   Gene count: 50, True target: ['STAT3', 'XPA', 'MUTYH']612026-04-08 00:36:49,914 - GenomIQEnv - INFO - ENV INIT | Domain=gene_expression, Task=feedback_loop, MaxSteps=50, Seed=42622026-04-08 00:36:49,914 - GenomIQEnv - INFO -   Hidden pattern: INTERACTION pair → ['IL10', 'SERPINE1'] (indices=[85, 95])632026-04-08 00:36:49,914 - GenomIQEnv - INFO - ENV RESET | Episode #0642026-04-08 00:36:49,914 - GenomIQEnv - INFO -   Matrix shape: (100, 5) (genes × conditions)652026-04-08 00:36:49,914 - GenomIQEnv - INFO -   Gene count: 100, True target: ['IL10', 'SERPINE1']662026-04-08 00:36:49,914 - GenomIQEnv - INFO - ENV INIT | Domain=gene_expression, Task=methylation_marker, MaxSteps=50, Seed=42672026-04-08 00:36:49,914 - GenomIQEnv - INFO -   Hidden pattern: SINGLE regulator → LDHA (idx=12)682026-04-08 00:36:49,914 - GenomIQEnv - INFO - ENV RESET | Episode #0692026-04-08 00:36:49,914 - GenomIQEnv - INFO -   Matrix shape: (20, 2) (genes × conditions)702026-04-08 00:36:49,914 - GenomIQEnv - INFO -   Gene count: 20, True target: ['LDHA']712026-04-08 00:36:49,915 - GenomIQEnv - INFO - ENV INIT | Domain=gene_expression, Task=chromatin_cluster, MaxSteps=50, Seed=42722026-04-08 00:36:49,915 - GenomIQEnv - INFO -   Hidden pattern: CLUSTER → ['STAT3', 'XPA', 'MUTYH'] (indices=[6, 24, 25])732026-04-08 00:36:49,915 - GenomIQEnv - INFO - ENV RESET | Episode #0742026-04-08 00:36:49,915 - GenomIQEnv - INFO -   Matrix shape: (50, 3) (genes × conditions)752026-04-08 00:36:49,915 - GenomIQEnv - INFO -   Gene count: 50, True target: ['STAT3', 'XPA', 'MUTYH']762026-04-08 00:36:49,916 - GenomIQEnv - INFO - ENV INIT | Domain=gene_expression, Task=epigenetic_interaction, MaxSteps=50, Seed=42772026-04-08 00:36:49,916 - GenomIQEnv - INFO -   Hidden pattern: INTERACTION pair → ['IL10', 'SERPINE1'] (indices=[85, 95])782026-04-08 00:36:49,916 - GenomIQEnv - INFO - ENV RESET | Episode #0792026-04-08 00:36:49,916 - GenomIQEnv - INFO -   Matrix shape: (100, 5) (genes × conditions)802026-04-08 00:36:49,916 - GenomIQEnv - INFO -   Gene count: 100, True target: ['IL10', 'SERPINE1']812026-04-08 00:36:49,917 - GenomIQEnv - INFO - ENV INIT | Domain=gene_expression, Task=promoter_strength, MaxSteps=50, Seed=42822026-04-08 00:36:49,917 - GenomIQEnv - INFO -   Hidden pattern: SINGLE regulator → LDHA (idx=12)832026-04-08 00:36:49,917 - GenomIQEnv - INFO - ENV RESET | Episode #0842026-04-08 00:36:49,917 - GenomIQEnv - INFO -   Matrix shape: (20, 1) (genes × conditions)852026-04-08 00:36:49,917 - GenomIQEnv - INFO -   Gene count: 20, True target: ['LDHA']862026-04-08 00:36:49,917 - GenomIQEnv - INFO - ENV INIT | Domain=gene_expression, Task=circuit_module, MaxSteps=50, Seed=42872026-04-08 00:36:49,918 - GenomIQEnv - INFO -   Hidden pattern: CLUSTER → ['CDH1', 'RUNX2', 'DOT1L'] (indices=[1, 9, 25])882026-04-08 00:36:49,918 - GenomIQEnv - INFO - ENV RESET | Episode #0892026-04-08 00:36:49,918 - GenomIQEnv - INFO -   Matrix shape: (40, 3) (genes × conditions)902026-04-08 00:36:49,918 - GenomIQEnv - INFO -   Gene count: 40, True target: ['CDH1', 'RUNX2', 'DOT1L']912026-04-08 00:36:49,918 - GenomIQEnv - INFO - ENV INIT | Domain=gene_expression, Task=pathway_crosstalk, MaxSteps=50, Seed=42922026-04-08 00:36:49,918 - GenomIQEnv - INFO -   Hidden pattern: INTERACTION pair → ['MDM2', 'ASNS'] (indices=[42, 61])932026-04-08 00:36:49,918 - GenomIQEnv - INFO - ENV RESET | Episode #0942026-04-08 00:36:49,918 - GenomIQEnv - INFO -   Matrix shape: (80, 5) (genes × conditions)952026-04-08 00:36:49,918 - GenomIQEnv - INFO -   Gene count: 80, True target: ['MDM2', 'ASNS']96INFO:     Application startup complete.97INFO:     Uvicorn running on http://0.0.0.0:7860 (Press CTRL+C to quit)982026-04-08 00:36:57,928 - GenomIQEnv - INFO -   Hidden pattern: SINGLE regulator → CCNB1 (idx=10)992026-04-08 00:36:57,928 - GenomIQEnv - INFO - ENV RESET | Episode #11002026-04-08 00:36:57,928 - GenomIQEnv - INFO -   Matrix shape: (20, 1) (genes × conditions)1012026-04-08 00:36:57,928 - GenomIQEnv - INFO -   Gene count: 20, True target: ['CCNB1']102INFO:     127.0.0.1:61395 - "POST /reset HTTP/1.1" 200 OK103INFO:     Shutting down104INFO:     Waiting for application shutdown.105INFO:     Application shutdown complete.106INFO:     Finished server process [87202]107