Pathovis/basic_preprocessing_steps

1aiofiles==23.2.12alabaster==0.7.163albumentations==1.3.14altair==5.3.05annotated-types==0.7.06anyio==4.4.07appnope==0.1.48argon2-cffi==23.1.09argon2-cffi-bindings==21.2.010arrow==1.3.011asciitree==0.3.312asttokens==2.4.113async-lru==2.0.414attrs==23.2.015Babel==2.15.016beautifulsoup4==4.12.317bleach==6.1.018blinker==1.8.219bokeh==3.3.220certifi==2024.7.421cffi==1.16.022charset-normalizer==3.3.223click==8.1.724comm==0.2.225contourpy==1.2.126cycler==0.12.127debugpy==1.8.228decorator==5.1.129defusedxml==0.7.130dicomweb-client==0.59.131dnspython==2.6.132docutils==0.20.133email_validator==2.2.034exceptiongroup==1.2.235executing==2.0.136fastapi==0.111.137fastapi-cli==0.0.438fasteners==0.1939fastjsonschema==2.20.040ffmpy==0.3.241filelock==3.13.142Flask==3.0.043Flask-Cors==4.0.044fonttools==4.53.145fqdn==1.5.146fsspec==2024.6.147Glymur==0.12.848gradio49gradio_client==0.6.150h11==0.14.051httpcore==1.0.552httptools==0.6.153httpx==0.27.054huggingface-hub==0.24.255idna==3.756imagecodecs==2023.9.1857imageio==2.34.258imagesize==1.4.159importlib_metadata==8.2.060importlib_resources==6.4.061ipykernel==6.29.562ipython==8.18.163isoduration==20.11.064itsdangerous==2.2.065jedi==0.19.166Jinja2==3.1.467joblib==1.3.268json5==0.9.2569jsonpointer==3.0.070jsonschema==4.23.071jsonschema-specifications==2023.12.172jupyter-events==0.10.073jupyter-lsp==2.2.574jupyter_client==8.6.275jupyter_core==5.7.276jupyter_server==2.14.277jupyter_server_terminals==0.5.378jupyterlab==4.0.979jupyterlab_pygments==0.3.080jupyterlab_server==2.27.381kiwisolver==1.4.582lazy_loader==0.483llvmlite==0.41.184lxml==5.2.285markdown-it-py==3.0.086MarkupSafe==2.1.587matplotlib==3.8.288matplotlib-inline==0.1.789mdurl==0.1.290mistune==3.0.291mpmath==1.3.092nbclient==0.10.093nbconvert==7.16.494nbformat==5.10.495nest-asyncio==1.6.096networkx==3.2.197notebook_shim==0.2.498numba==0.58.199numcodecs==0.12.1100numpy==1.26.2101opencv-python==4.8.0.76102opencv-python-headless==4.10.0.84103openslide-python==1.3.1104orjson==3.10.6105overrides==7.7.0106packaging==24.1107pandas==2.1.4108pandocfilters==1.5.1109parso==0.8.4110pexpect==4.9.0111Pillow==10.1.0112platformdirs==4.2.2113prometheus_client==0.20.0114prompt_toolkit==3.0.47115psutil==6.0.0116ptyprocess==0.7.0117pure_eval==0.2.3118pycparser==2.22119pydantic==2.8.2120pydantic_core==2.20.1121pydicom==2.4.4122pydub==0.25.1123Pygments==2.18.0124pynndescent==0.5.13125pyparsing==3.1.2126python-dateutil==2.9.0.post0127python-dotenv==1.0.1128python-json-logger==2.0.7129python-multipart==0.0.9130pytz==2024.1131PyYAML==6.0.1132pyzmq==26.0.3133qudida==0.0.4134referencing==0.35.1135requests==2.31.0136retrying==1.3.4137rfc3339-validator==0.1.4138rfc3986-validator==0.1.1139rich==13.7.1140rpds-py==0.19.1141ruff==0.5.5142scikit-image==0.24.0143scikit-learn==1.3.2144scipy==1.11.4145semantic-version==2.10.0146Send2Trash==1.8.3147shapely==2.0.2148shellingham==1.5.4149SimpleITK==2.3.1150six==1.16.0151sniffio==1.3.1152snowballstemmer==2.2.0153soupsieve==2.5154Sphinx==7.2.6155sphinxcontrib-applehelp==1.0.8156sphinxcontrib-devhelp==1.0.6157sphinxcontrib-htmlhelp==2.0.6158sphinxcontrib-jsmath==1.0.1159sphinxcontrib-qthelp==1.0.8160sphinxcontrib-serializinghtml==1.1.10161stack-data==0.6.3162starlette==0.37.2163sympy==1.13.1164terminado==0.18.1165threadpoolctl==3.5.0166tiatoolbox==1.5.1167tifffile==2023.12.9168tinycss2==1.3.0169tomli==2.0.1170tomlkit==0.12.0171toolz==0.12.1172torch==2.1.2173torchvision==0.16.2174tornado==6.4.1175tqdm==4.66.1176traitlets==5.14.3177typer==0.12.3178types-python-dateutil==2.9.0.20240316179typing_extensions==4.12.2180tzdata==2024.1181umap-learn==0.5.5182uri-template==1.3.0183urllib3==2.2.2184uvicorn==0.30.3185uvloop==0.19.0186watchfiles==0.22.0187wcwidth==0.2.13188webcolors==24.6.0189webencodings==0.5.1190websocket-client==1.8.0191websockets==11.0.3192Werkzeug==3.0.3193wsidicom==0.17.0194xyzservices==2024.6.0195zarr==2.16.1196zipp==3.19.2197