HuggyMonkey/Chat-To-Sequence

1class Sequence:2    def __init__(self, sequence):3        self.sequence = sequence.lower()4 5    def get_seq_length(self):6        return len(self.sequence)7        # Total length of sequence8 9    def get_unit_count(self, unit):10        unit = unit.lower()11        return self.sequence.count(unit)12        # Unit count of specified unit in sequence13 14    def get_unit_percentage(self, unit):15        total_units = self.get_seq_length()16        unit_count = self.get_unit_count(unit)17        unit_percentage = (unit_count / total_units) * 10018        return unit_percentage19        # unit percentage for specified unit in sequence20 21    def get_unit_at_position(self, position):22        pos = position - 123 24        if 0 <= pos < len(self.sequence):25            base_at_pos = self.sequence[pos]26            return base_at_pos27        else:28            return "Position is out of range. Positions should be 1 - {}".format(len(self.sequence))29        # Returns the unit at a specified position in the sequence30 31    def get_unit_at_positions(self, position_list):32        if self.check_positions(position_list):33            pos_dict = {i: self.sequence[i - 1] for i in position_list if 0 <= i < len(self.sequence)}34            return pos_dict35        else:36            return "Position is out of range.Positions should be 1 - {}".format(len(self.sequence))37        # Returns unit for each position in list38 39    def check_positions(self, position_list):40        # Check if the positions are within the range of the sequence length41        # Value = 0 -> position out of sequence range42        # Value = 1 -> position within sequence range43 44        checked = {}45        for pos in position_list:46            if pos <= 0 or pos > len(self.sequence):47                checked[pos] = 048            else:49                checked[pos] = 150 51        # Check if all values are equal to 1 / All positions in the list are within the range of the sequence length52        all_values_equal_to_1 = all(value == 1 for value in checked.values())53 54        if all_values_equal_to_1:55            valid = True56        else:57            valid = False58 59        return valid60 61    def get_subsequence(self, start_position, end_position):62        # Ensure the start and end positions are within the bounds of the sequence63        if start_position > 0 and end_position <= len(self.sequence):64            return self.sequence[start_position - 1:end_position]65        else:66            return "Position is out of range. Positions should be 1 - {}".format(len(self.sequence))67        # Returns the subsequence based on given positions68 69    def subsequence_total_units(self, start_position, end_position):70        return len(self.get_subsequence(start_position, end_position))71        # Returns the total number of units in the subsequence72 73