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1#! /usr/bin/python32 3r'''############################################################################4################################################################################5#6#7#	    Tegridy Cupy Python Module (TCUPY)8#	    Version 1.09#10#	    Project Los Angeles11#12#	    Tegridy Code 202613#14#       https://github.com/asigalov61/tegridy-tools15#16#17################################################################################18#19#       Copyright 2026 Project Los Angeles / Tegridy Code20#21#       Licensed under the Apache License, Version 2.0 (the "License");22#       you may not use this file except in compliance with the License.23#       You may obtain a copy of the License at24#25#           http://www.apache.org/licenses/LICENSE-2.026#27#       Unless required by applicable law or agreed to in writing, software28#       distributed under the License is distributed on an "AS IS" BASIS,29#       WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.30#       See the License for the specific language governing permissions and31#       limitations under the License.32#33################################################################################34################################################################################35#36#       Critical dependencies37#38#       !pip install cupy-cuda13x39#       !pip install numpy==1.26.440#41################################################################################42'''43 44################################################################################45 46print('=' * 70)47print('Loading module...')48print('Please wait...')49print('=' * 70)50 51################################################################################52 53import sys54import os55import tqdm56 57################################################################################58 59try:60    import cupy as cp61    import numpy as np62    print('=' * 70)63    print('CuPy is found!')64    print('Will use CuPy and GPU for processing!')65    print('=' * 70)66 67except ImportError as e:68    print('Error: Could not import CuPy!')69    print(f'Details: {e}')70    print('=' * 70)71    print("Please make sure CuPy is installed.")72    print('pip install cupy-cuda13x')73    print('=' * 70)74    print('Will use NumPy for now...')75    import numpy as cp76    import numpy as np77    print('=' * 70)78 79################################################################################80 81from collections import defaultdict, deque82from typing import Optional, Tuple, Dict, Any, List83 84################################################################################85 86# Constants87MEMORY_LEN = 12       # Autoregressive context length88SEQUENCE_LENGTH = 32  # Each sequence has 24 triplets89 90# Baseline penalty values:91REPETITION_PENALTY = (1.0, 1.0, 1.0)      # base repetition penalty per element92SPIKE_PENALTY_STRENGTH = (1.0, 1.0, 1.0)    # base spike penalty strength per element93SPIKE_SIGMA = (1.0, 1.0, 1.0)               # baseline sigma value per element (minimum allowed)94 95###################################################################################96 97def find_numpy_array(src_array, trg_array):98 99    """100    Finds 1D numpy array in 2D numpy array101    """102 103    match_mask = np.all(src_array == trg_array, axis=1)104    105    return np.where(match_mask)[0]106 107###################################################################################108 109def vertical_list_search(src_list, trg_list):110    111    """112    For each vertical window of consecutive rows of height len(trg_list) in src_list,113    this function checks whether for every offset j (0 <= j < len(trg_list)) the row114    at index (window_start + j) contains trg_list[j].115 116    It returns a list of windows (each a list of consecutive row indices) that meet this condition.117    """118    119    if not src_list or not trg_list:120        return []121    122    n = len(src_list)123    k = len(trg_list)124    125    num_windows = n - k + 1126    127    if num_windows <= 0:128        return []129    130    # Determine the maximum row length.131    max_len = max(len(row) for row in src_list)132    133    # Determine a fill value guaranteed to be less than any valid value.134    global_min = min(min(row) for row in src_list if row)135    fill_value = global_min - 1136 137    # Build a padded 2D array A (shape n x max_len) from src_list.138    A = np.full((n, max_len), fill_value, dtype=np.int64)139    for i, row in enumerate(src_list):140        L = len(row)141        A[i, :L] = row142 143    # For each unique target in trg_list, compute a Boolean vector of length n.144    # present[t][i] will be True if A[i, :] contains t, else False.145    unique_targets = set(trg_list)146    147    present_dict = {}148    149    for t in unique_targets:150        # Compute along axis=1 so that for each row we see if any element equals t.151        present_dict[t] = np.any(A == t, axis=1)152    153    # Build a Boolean array B of shape (k, num_windows) where for each offset j,154    # B[j, s] = present_dict[ trg_list[j] ][s + j] for each window starting index s.155    B = np.empty((k, num_windows), dtype=bool)156    157    for j in range(k):158        t = trg_list[j]159        # For a vertical window starting at s, row s+j should contain t.160        B[j, :] = present_dict[t][j: j + num_windows]161    162    # A window is valid if all k rows in that window contain the required target.163    valid_windows_mask = np.all(B, axis=0)164    valid_starts = np.nonzero(valid_windows_mask)[0]165    166    # Create output windows (each as a list of consecutive row indices).167    result = [list(range(s, s + k)) for s in valid_starts]168    169    return result170 171 172###################################################################################173 174def pack_sequences(train_data, pad_val=-1):175    """176    Packs a list of variable-length token sequences into a 2D CuPy array.177    178    This version computes lengths and builds the padded array and mask entirely on GPU.179    It converts each sequence into a CuPy array, concatenates them, and assigns tokens in one shot.180    181    Returns:182      batch: a CuPy array of shape (n, max_len)183      lengths: a CuPy array of shape (n,) containing each sequence's length.184    """185    n = len(train_data)186    # Compute lengths of each sequence and convert to a CuPy array.187    lengths = cp.array([len(seq) for seq in train_data], dtype=cp.int64)188    max_len_val = int(cp.max(lengths).get())189    # Allocate the padded 2D array filled with pad_val.190    batch = cp.full((n, max_len_val), pad_val, dtype=cp.int64)191    # Create a boolean mask: for each row, positions less than the sequence length are valid.192    mask = cp.arange(max_len_val).reshape(1, max_len_val) < lengths.reshape(n, 1)193    # Convert each sequence to a CuPy array and concatenate them.194    sequences = [cp.array(seq, dtype=cp.int64) for seq in train_data]195    flat = cp.concatenate(sequences)196    # Fill in the valid positions.197    batch[mask] = flat198    return batch, lengths199 200###################################################################################201 202def count_best_pair_gpu(batch, lengths, factor, pad_val=-1):203    """204    Given the entire GPU-resident packed data, compute the most frequent205    adjacent pair (encoded as: pair_val = first * factor + second) on GPU.206    """207    n, L = batch.shape208    cols = cp.arange(L - 1, dtype=cp.int64)209    cols_expanded = cp.broadcast_to(cols, (n, L - 1))210    valid_mask = cols_expanded < cp.reshape(lengths, (n, 1)) - 1211 212    first_tokens = batch[:, :L - 1]213    second_tokens = batch[:, 1:L]214    valid_first = first_tokens[valid_mask]215    valid_second = second_tokens[valid_mask]216 217    pairs = valid_first * factor + valid_second218    if pairs.size == 0:219        return None220 221    sorted_pairs = cp.sort(pairs)222    diff = cp.diff(sorted_pairs)223    boundaries = cp.nonzero(diff)[0] + 1224    group_starts = cp.concatenate([cp.array([0], dtype=cp.int64), boundaries])225    group_ends = cp.concatenate([boundaries, cp.array([sorted_pairs.size], dtype=cp.int64)])226    group_counts = group_ends - group_starts227 228    max_idx = int(cp.argmax(group_counts))229    best_pair_enc = int(sorted_pairs[group_starts[max_idx]])230    best_freq = int(group_counts[max_idx])231    first = best_pair_enc // factor232    second = best_pair_enc % factor233    return (first, second, best_freq)234 235###################################################################################236 237merge_kernel_code = r'''238extern "C" __global__239void merge_pair_kernel(const long* input, long* output, 240                       const long* input_lengths, long* output_lengths,241                       const long num_rows, const long num_cols,242                       const long a, const long b, const long new_token,243                       const long pad_val) {244    int row = blockIdx.x * blockDim.x + threadIdx.x;245    if (row >= num_rows) return;246    long in_length = input_lengths[row];247    long out_idx = 0;248    bool skip_next = false;249    for (long i = 0; i < in_length; i++) {250        if (skip_next) {251            skip_next = false;252            continue;253        }254        long token = input[row * num_cols + i];255        if (i < in_length - 1 && token == a && input[row * num_cols + i + 1] == b) {256            output[row * num_cols + out_idx] = new_token;257            out_idx++;258            skip_next = true;259        } else {260            output[row * num_cols + out_idx] = token;261            out_idx++;262        }263    }264    output_lengths[row] = out_idx;265    for (long j = out_idx; j < num_cols; j++) {266        output[row * num_cols + j] = pad_val;267    }268}269'''270 271try:272    merge_kernel = cp.RawKernel(merge_kernel_code, 'merge_pair_kernel')273 274except:275    pass276 277###################################################################################278 279def learn_bpe_codes_gpu(train_data, vocab_size=4096, max_merges=None, pad_val=-1):280    """281    Learn BPE merge rules completely on GPU.282    283    The training data is packed once (using the vectorized pack_sequences).284    On each merge iteration, the best adjacent pair is computed on GPU and then merged285    into a new token via a custom merge kernel (with double-buffering).286    287    Returns:288      codes: a list of merge rules as ((first, second), new_token)289      final_data: the merged training data (list of sequences)290    """291    # Pack the entire dataset onto GPU.292    batch, lengths = pack_sequences(train_data, pad_val)293    n, L = batch.shape294 295    # Initialize vocabulary and the next available token.296    initial_vocab = {token for seq in train_data for token in seq}297    next_token = max(initial_vocab) + 1298    codes = []299    merge_count = 0300    pbar = tqdm.tqdm(total=max_merges if max_merges is not None else None,301                desc="Learning BPE Codes (GPU)", leave=True)302 303    # Preallocate buffers for double-buffering.304    work_batch = cp.empty_like(batch)305    work_lengths = cp.empty_like(lengths)306    input_batch = batch307    input_lengths = lengths308 309    threads_per_block = 128310    blocks = (n + threads_per_block - 1) // threads_per_block311 312    while next_token < vocab_size and (max_merges is None or merge_count < max_merges):313        # Early stop if all sequences have collapsed (checked on GPU).314        if bool(cp.all(input_lengths == 1)):315            pbar.write("All sequences have collapsed; stopping early.")316            break317 318        factor = next_token  # by construction, every token is < next_token319        best = count_best_pair_gpu(input_batch, input_lengths, factor, pad_val)320        if best is None:321            pbar.write("No mergeable pairs found; stopping early.")322            break323        324        best_pair = (best[0], best[1])325        best_freq = best[2]326        if best_freq < 2:327            pbar.write("Best pair frequency is less than 2; stopping early.")328            break329 330        codes.append((best_pair, next_token))331 332        # Launch the merge kernel.333        merge_kernel((blocks,), (threads_per_block,),334                     (input_batch,335                      work_batch,336                      input_lengths,337                      work_lengths,338                      cp.int64(n),339                      cp.int64(L),340                      cp.int64(best_pair[0]),341                      cp.int64(best_pair[1]),342                      cp.int64(next_token),343                      cp.int64(pad_val)))344        # Swap buffers for double-buffering.345        input_batch, work_batch = work_batch, input_batch346        input_lengths, work_lengths = work_lengths, input_lengths347 348        next_token += 1349        merge_count += 1350        pbar.update(1)351    pbar.close()352 353    final_batch = cp.asnumpy(input_batch)354    final_lengths = cp.asnumpy(input_lengths)355    final_data = [final_batch[i, :final_lengths[i]].tolist() for i in range(n)]356    return codes, final_data357 358###################################################################################359 360fused_merge_kernel_code = r'''361extern "C" __global__362void fused_merge_kernel(long* data_in, long* data_out, long* lengths, const long pad_val,363                          const long num_rows, const long max_len, const long num_merges, const long* merge_rules) {364    int row = blockIdx.x * blockDim.x + threadIdx.x;365    if (row >= num_rows) return;366    long base = row * max_len;367    long cur_len = lengths[row];368    long* cur = data_in + base;369    long* other = data_out + base;370    // Process each merge rule sequentially.371    for (int m = 0; m < num_merges; m++) {372        long a = merge_rules[3 * m];373        long b = merge_rules[3 * m + 1];374        long new_token = merge_rules[3 * m + 2];375        long out_idx = 0;376        for (int i = 0; i < cur_len; i++) {377            if (i < cur_len - 1 && cur[i] == a && cur[i+1] == b) {378                other[out_idx] = new_token;379                out_idx++;380                i++;  // Skip the next token.381            } else {382                other[out_idx] = cur[i];383                out_idx++;384            }385        }386        cur_len = out_idx;387        // Swap pointers for the next merge.388        long* temp = cur;389        cur = other;390        other = temp;391    }392    lengths[row] = cur_len;393    // Pad the remaining positions with pad_val.394    for (int i = cur_len; i < max_len; i++) {395        cur[i] = pad_val;396    }397    // If the final result is not in data_in, copy back.398    if (cur != data_in + base) {399        for (int i = 0; i < cur_len; i++) {400            data_in[base + i] = cur[i];401        }402    }403}404'''405 406try:407    fused_kernel = cp.RawKernel(fused_merge_kernel_code, 'fused_merge_kernel')408 409except:410    pass411 412###################################################################################413 414def retokenize_train_data_fused_gpu(train_data, codes, pad_val=-1):415    """416    Retokenize training data using the fully fused GPU kernel.417    418    The entire training dataset is first packed into GPU memory (using pack_sequences).419    All learned merge rules (provided in 'codes') are applied via a single kernel launch.420    Each GPU thread processes one sequence by applying all merge rules sequentially.421    422    Returns:423      tokenized_data: list of retokenized sequences.424    """425    # Pack the data.426    batch, lengths = pack_sequences(train_data, pad_val)427    n, max_len = batch.shape428    # Build a flattened merge_rules array using CuPy.429    if len(codes) > 0:430        merge_rules_list = [[rule[0][0], rule[0][1], rule[1]] for rule in codes]431        merge_rules_gpu = cp.array(merge_rules_list, dtype=cp.int64)432        merge_rules_gpu = merge_rules_gpu.reshape(-1)433    else:434        merge_rules_gpu = cp.empty((0,), dtype=cp.int64)435    num_merges = merge_rules_gpu.shape[0] // 3436    # Preallocate a scratch buffer.437    scratch = cp.empty_like(batch)438    threads_per_block = 128439    blocks = (n + threads_per_block - 1) // threads_per_block440    # Launch the fused kernel.441    fused_kernel((blocks,), (threads_per_block,),442                 (batch, scratch, lengths, cp.int64(pad_val),443                  cp.int64(n), cp.int64(max_len), cp.int64(num_merges), merge_rules_gpu))444    final_batch = cp.asnumpy(batch)445    final_lengths = cp.asnumpy(lengths)446    tokenized_data = [final_batch[i, :final_lengths[i]].tolist() for i in range(n)]447    return tokenized_data448 449###################################################################################450 451def bpe_encode(seq, codes):452    """453    Iteratively encodes a sequence using BPE merge rules provided in a dictionary.454    455    Args:456        seq (list): A list of tokens (e.g. integers) representing the input sequence.457        codes (dict): A dictionary mapping token pairs (a tuple of two tokens) 458                      to a merged token. For example:459                      { (1, 2): 100, (100, 3): 101 }460    461    Returns:462        list: The encoded sequence after applying all possible merges.463    464    The function repeatedly scans the entire sequence from left to right;465    whenever it finds a contiguous token pair that exists as a key in the466    codes dict, it replaces that pair with the merged token. This pass is467    repeated until no more merges are possible.468    """469 470    if type(codes) == list:471        codes = dict(codes)472        473    encoded_seq = seq.copy()  # work on a copy so as not to modify the original474    done = False475    while not done:476        new_seq = []477        i = 0478        changed = False479        while i < len(encoded_seq):480            # If a merge is possible, merge the two tokens.481            if i < len(encoded_seq) - 1 and (encoded_seq[i], encoded_seq[i + 1]) in codes:482                new_seq.append(codes[(encoded_seq[i], encoded_seq[i + 1])])483                i += 2  # Skip the next token as it was merged.484                changed = True485            else:486                new_seq.append(encoded_seq[i])487                i += 1488        # If no merges occurred in this pass, exit the loop.489        if not changed:490            done = True491        encoded_seq = new_seq492    return encoded_seq493 494###################################################################################495 496def bpe_decode(seq, codes):497    """498    Decodes a sequence encoded with BPE merge rules defined in a codes dictionary.499    500    Args:501        seq (list): The encoded sequence (a list of tokens).502        codes (dict): A dictionary mapping token pairs to the merged token, used during encoding.503    504    Returns:505        list: The fully decoded sequence, with all merged tokens recursively expanded.506    507    The function constructs a reverse mapping that converts a merged token back into 508    its constituent pair. Each token in the sequence is then recursively expanded.509    """510 511    if type(codes) == list:512        codes = dict(codes)513        514    # Build the reverse mapping: key = merged token, value = tuple (original token pair)515    reverse_mapping = {merged: pair for pair, merged in codes.items()}516 517    def recursive_expand(token):518        # If the token is a merged token, expand it recursively.519        if token in reverse_mapping:520            a, b = reverse_mapping[token]521            return recursive_expand(a) + recursive_expand(b)522        else:523            return [token]524 525    decoded_seq = []526    for token in seq:527        decoded_seq.extend(recursive_expand(token))528    return decoded_seq529 530###################################################################################531 532def ensure_triplet(val: Any, name: str = "") -> Tuple[float, float, float]:533    """534    Ensure the given parameter is returned as a triplet.535    If provided as a scalar, promote it to a triplet.536    """537    if np.isscalar(val):538        return (float(val), float(val), float(val))539    elif isinstance(val, (list, tuple)) and len(val) == 3:540        return tuple(float(x) for x in val)541    else:542        raise ValueError(f"{name} must be a scalar or a sequence of 3 numbers.")543 544###################################################################################545 546REP_PENALTY = ensure_triplet(REPETITION_PENALTY, "REPETITION_PENALTY")547SPIKE_STRENGTH = ensure_triplet(SPIKE_PENALTY_STRENGTH, "SPIKE_PENALTY_STRENGTH")548SPIKE_SIG = ensure_triplet(SPIKE_SIGMA, "SPIKE_SIGMA")549 550###################################################################################551 552def sliding_window_view_alternative(a: np.ndarray, window_length: int) -> np.ndarray:553    """554    Create a sliding-window view (without copying) of an array.555    Expected input shape: (n, L, d) and returns: (n, L - window_length + 1, window_length, d)556    """557    n, L, d = a.shape558    new_shape = (n, L - window_length + 1, window_length, d)559    new_strides = (a.strides[0], a.strides[1], a.strides[1], a.strides[2])560    return np.lib.stride_tricks.as_strided(a, shape=new_shape, strides=new_strides)561 562###################################################################################563 564def build_ngram_mapping(data: np.ndarray, memory_len: int) -> Dict[Any, Dict[Any, int]]:565    """566    Build an n-gram mapping from a context (a sequence of triplets) to candidate triplets with frequencies.567    """568    n, L, d = data.shape569    window_length = memory_len + 1  # context (memory) + candidate570    windows = sliding_window_view_alternative(data, window_length)571    # windows shape: (n, L - window_length + 1, window_length, d)572 573    # Split windows into context (first memory_len triplets) and candidates (last triplet)574    contexts = windows[:, :, :memory_len, :]   # shape: (n, num_windows, memory_len, d)575    candidates = windows[:, :, memory_len, :]    # shape: (n, num_windows, d)576 577    # Flatten the batch and window dimensions.578    contexts_flat = contexts.reshape(-1, memory_len, d)579    candidates_flat = candidates.reshape(-1, d)580 581    mapping = defaultdict(lambda: defaultdict(int))582    total_windows = contexts_flat.shape[0]583    for context_arr, candidate_arr in tqdm.tqdm(584            zip(contexts_flat, candidates_flat),585            total=total_windows,586            desc="Building n-gram mapping"):587        context_key = tuple(map(tuple, context_arr))  # use a tuple of triplets as the key588        candidate_val = tuple(candidate_arr)589        mapping[context_key][candidate_val] += 1590 591    return {context: dict(candidates) for context, candidates in mapping.items()}592 593###################################################################################594 595def precompute_mapping_lookup(mapping: Dict[Any, Dict[Any, int]]) -> Dict[Any, Tuple[Tuple[Any, ...], np.ndarray]]:596    """597    Converts the mapping into a lookup table: context -> (tuple(candidates), frequencies_array).598    """599    mapping_lookup = {}600    for context, candidate_dict in tqdm.tqdm(mapping.items(), desc="Precomputing lookup"):601        candidates = tuple(candidate_dict.keys())602        frequencies = np.array(list(candidate_dict.values()), dtype=np.float64)603        mapping_lookup[context] = (candidates, frequencies)604    return mapping_lookup605 606###################################################################################607 608def build_training_sequences_set(data: np.ndarray) -> set:609    """610    Build a set of training sequences (each as a tuple of triplets) for uniqueness checking.611    """612    return {tuple(map(tuple, seq)) for seq in data}613 614###################################################################################615 616def generate_sequence_optimized(mapping_lookup: Dict[Any, Tuple[Tuple[Any, ...], np.ndarray]],617                                training_set: set,618                                memory_len: int,619                                sequence_length: int = 24,620                                max_attempts: int = 1000) -> Optional[Tuple[Tuple[float, float, float], ...]]:621    """622    Autoregressively generate a new, unique sequence using the precomputed mapping lookup.623    The invariant maintained is: the second element of one triplet is never greater than the first element624    of the following triplet.625 626    Two dynamic adjustments are applied for candidate selection:627    628      1. **Dynamic Repetition Penalty:**  629         For each candidate, count the occurrences of each element in the generated sequence.630         Rather than a fixed penalty, this repetition penalty scales with the ratio631         (current_length / sequence_length). In log-space, it subtracts:632             (current_length / sequence_length) * sum_k(count[k] * log(REP_PENALTY[k])633      2. **Dynamic Spike (Variance) Penalty:**  634         For each candidate, compute the squared difference from the running average for each element.635         Use a dynamic sigma that is the maximum between the running standard deviation and the baseline.636         The penalty term for each element is:637             SPIKE_STRENGTH[k] * ((cand[k] - running_avg[k])^2) / (2 * dynamic_sigma[k]^2)638         The overall spike penalty is the sum of the three terms and is subtracted from the candidate’s log frequency.639 640    The resulting candidate log score is computed as:641         log(candidate_frequency) - rep_penalty_component - spike_penalty_component642    A numerical stable softmax is then applied over these scores to determine the probability for drawing a candidate.643 644    If no candidate passing the invariant is found, the attempt is aborted.645 646    Parameters:647      mapping_lookup: Precomputed lookup mapping (context → (candidates, frequencies)).648      training_set: Set of training sequences to ensure uniqueness.649      memory_len: Number of triplets used as context.650      sequence_length: Desired length of the generated sequence.651      max_attempts: Maximum number of generation attempts.652 653    Returns:654      A new unique sequence (tuple of triplets) that respects the invariant, or None if not found.655    """656    mapping_keys = list(mapping_lookup.keys())657    num_keys = len(mapping_keys)658 659    for attempt in range(max_attempts):660        # Select a seed context randomly (from training data so that the invariant holds).661        seed = mapping_keys[np.random.randint(0, num_keys)]662        generated_sequence: List[Tuple[float, float, float]] = list(seed)663        valid_generation = True664 665        while len(generated_sequence) < sequence_length:666            last_triplet = generated_sequence[-1]667            current_context = tuple(generated_sequence[-memory_len:])  # context as tuple of triplets668            candidate_found = False669 670            if current_context in mapping_lookup:671                candidates, frequencies = mapping_lookup[current_context]672                # Filter candidates by invariant:673                # Candidate's first element must be >= last triplet's second element.674                valid_indices = [i for i, cand in enumerate(candidates) if cand[0] >= last_triplet[1]]675                if valid_indices:676                    # Filter candidates and their associated frequencies.677                    filtered_freqs = frequencies[valid_indices]678                    filtered_candidates = [candidates[i] for i in valid_indices]679 680                    # Convert candidates into a NumPy array for vectorized operations.681                    candidate_array = np.array(filtered_candidates, dtype=np.float64)  # shape: (n_candidates, 3)682                    683                    # Prepare generation history as array.684                    generated_array = np.array(generated_sequence, dtype=np.float64)   # shape: (T, 3)685                    current_length = generated_array.shape[0]686                    687                    # Running average and standard deviation for dynamic spike adjustment.688                    running_avg = np.mean(generated_array, axis=0)       # shape: (3,)689                    running_std = np.std(generated_array, axis=0)          # shape: (3,)690                    # Dynamic sigma: ensure a minimum sigma value.691                    dynamic_sigma = np.maximum(running_std, np.array(SPIKE_SIG))692                    693                    # --- Compute Repetition Penalty ---694                    # For each candidate, count the number of occurrences for each element along the corresponding column.695                    rep_counts = np.array([696                        [np.sum(generated_array[:, k] == candidate_array[i, k]) for k in range(3)]697                        for i in range(candidate_array.shape[0])698                    ])  # shape: (n_candidates, 3)699                    # The repetition penalty in log-space.700                    rep_penalty_term = np.sum(rep_counts * np.log(np.array(REP_PENALTY)) *701                                              (current_length / sequence_length), axis=1)  # shape: (n_candidates,)702 703                    # --- Compute Spike (Variance) Penalty ---704                    # Compute the difference per candidate from the running average.705                    diff = candidate_array - running_avg  # shape: (n_candidates, 3)706                    spike_penalty_term = np.sum(np.array(SPIKE_STRENGTH) * (diff**2) / (2 * (dynamic_sigma**2)),707                                                axis=1)  # shape: (n_candidates,)708 709                    # --- Compute Candidate Log-Scores ---710                    # Use np.log on frequencies (they are positive by construction).711                    log_freq = np.log(filtered_freqs)712                    log_scores = log_freq - rep_penalty_term - spike_penalty_term713 714                    # --- Softmax in Log-space (stable computation) ---715                    max_log = np.max(log_scores)716                    exp_scores = np.exp(log_scores - max_log)717                    probabilities = exp_scores / np.sum(exp_scores)718                    719                    # Choose the next candidate using advanced probabilities.720                    chosen_idx = np.random.choice(len(filtered_candidates), p=probabilities)721                    next_triplet = filtered_candidates[chosen_idx]722                    candidate_found = True723 724            if not candidate_found:725                # Abort this generation attempt if no valid candidate is available.726                valid_generation = False727                break728 729            generated_sequence.append(next_triplet)730 731        # Ensure the final sequence meets the invariant and is unique.732        if valid_generation and len(generated_sequence) == sequence_length:733            new_sequence = tuple(generated_sequence)734            invariant_ok = all(a[1] <= b[0] for a, b in zip(new_sequence, new_sequence[1:]))735            if invariant_ok and new_sequence not in training_set:736                return new_sequence737 738    return None739 740###################################################################################741 742def analyze_generated_sequence(sequence: tuple, mapping_lookup: dict, memory_len: int) -> tuple:743    """744    Analyze the generated sequence and return several useful statistics745    as both a dictionary and as a nicely formatted string report.746    747    Statistics Computed:748      - unigram_diversity: Ratio of unique triplets to total triplets.749      - repetition_rate: Fraction of repeated triplets.750      - bigram_diversity: Ratio of unique consecutive pairs to total pairs.751      - max_consecutive_repetitions: Maximum number of identical consecutive triplets.752      - avg_candidate_probability (overfit rate): For the transitions (using a sliding window of size753          MEMORY_LEN as context followed by candidate), the average probability of the chosen candidate754          as per the training mapping.755      756      Additional Analytics:757      - element_stats: For each element (index 0, 1, 2) in a triplet, includes:758            * mean, standard deviation, minimum, maximum, and average consecutive absolute difference.759      - avg_transition_entropy: The average entropy of the candidate distributions (from mapping_lookup)760          for each transition context.761      - context_coverage: The fraction of transitions (based on context of length MEMORY_LEN) that are found 762          in the mapping_lookup.763    764    Parameters:765      sequence: Generated sequence (tuple of triplets).766      mapping_lookup: Precomputed mapping lookup.767      memory_len: The context length used.768    769    Returns:770      A tuple containing:771          (stats_dict, stats_report_string)772    """773    stats = {}774    seq_len = len(sequence)775    776    # --- Basic Statistics ---777    778    # Unigram.779    unique_triplets = len(set(sequence))780    stats["unigram_diversity"] = unique_triplets / seq_len781    stats["repetition_rate"] = 1 - (unique_triplets / seq_len)782    783    # Bigram.784    bigrams = [(sequence[i], sequence[i+1]) for i in range(seq_len - 1)]785    unique_bigrams = len(set(bigrams))786    stats["bigram_diversity"] = unique_bigrams / (seq_len - 1)787    788    # Maximum consecutive repetitions.789    max_consecutive = 1790    current_consecutive = 1791    for i in range(1, seq_len):792        if sequence[i] == sequence[i-1]:793            current_consecutive += 1794            if current_consecutive > max_consecutive:795                max_consecutive = current_consecutive796        else:797            current_consecutive = 1798    stats["max_consecutive_repetitions"] = max_consecutive799 800    # Avg Candidate Probability (Overfit Rate)801    overfit_probs = []802    for i in range(memory_len, seq_len):803        context = tuple(sequence[i - memory_len: i])804        candidate = sequence[i]805        if context in mapping_lookup:806            candidates, frequencies = mapping_lookup[context]807            total_freq = np.sum(frequencies)808            try:809                idx = candidates.index(candidate)810                cand_prob = frequencies[idx] / total_freq811                overfit_probs.append(cand_prob)812            except ValueError:813                pass814    stats["avg_candidate_probability"] = np.mean(overfit_probs) if overfit_probs else None815 816    # --- Additional Analytics ---817 818    # 1. Element-Level Statistics.819    seq_arr = np.array(sequence)  # shape: (seq_len, 3)820    element_stats = {}821    for dim in range(seq_arr.shape[1]):822        values = seq_arr[:, dim]823        mean_val = np.mean(values)824        std_val = np.std(values)825        min_val = np.min(values)826        max_val = np.max(values)827        # Calculate average absolute difference between consecutive values:828        diffs = np.abs(np.diff(values))829        avg_diff = np.mean(diffs) if diffs.size > 0 else 0830        element_stats[f"element_{dim}"] = {831            "mean": mean_val,832            "std": std_val,833            "min": min_val,834            "max": max_val,835            "avg_consecutive_diff": avg_diff,836        }837    stats["element_stats"] = element_stats838 839    # 2. Transition Entropy:840    entropies = []841    valid_transitions = 0842    for i in range(memory_len, seq_len):843        context = tuple(sequence[i - memory_len: i])844        if context in mapping_lookup:845            candidates, freqs = mapping_lookup[context]846            total_freq = np.sum(freqs)847            if total_freq > 0:848                probs = freqs / total_freq849                # Add a very small constant to avoid log(0)850                epsilon = 1e-10851                entropy = -np.sum(probs * np.log(probs + epsilon))852                entropies.append(entropy)853                valid_transitions += 1854    stats["avg_transition_entropy"] = np.mean(entropies) if entropies else None855 856    # 3. Context Coverage:857    total_transitions = seq_len - memory_len858    stats["context_coverage"] = (valid_transitions / total_transitions) if total_transitions > 0 else None859 860    # --- Build a Pretty Report String ---861    sep_line = "-" * 60862    lines = []863    lines.append(sep_line)864    lines.append("Sequence Analytics Report:")865    lines.append(sep_line)866    lines.append("Overall Statistics:")867    lines.append(f"  Unigram Diversity         : {stats['unigram_diversity']:.3f}")868    lines.append(f"  Repetition Rate           : {stats['repetition_rate']:.3f}")869    lines.append(f"  Bigram Diversity          : {stats['bigram_diversity']:.3f}")870    lines.append(f"  Max Consecutive Repetitions: {stats['max_consecutive_repetitions']}")871    cand_prob = stats["avg_candidate_probability"]872    cand_prob_str = f"{cand_prob:.3f}" if cand_prob is not None else "N/A"873    lines.append(f"  Avg Candidate Probability : {cand_prob_str}")874    lines.append("")875    876    lines.append("Element-Level Statistics:")877    for dim in sorted(element_stats.keys()):878        ed = element_stats[dim]879        lines.append(f"  {dim.capitalize()}:")880        lines.append(f"    Mean                 : {ed['mean']:.3f}")881        lines.append(f"    Std Dev              : {ed['std']:.3f}")882        lines.append(f"    Min                  : {ed['min']:.3f}")883        lines.append(f"    Max                  : {ed['max']:.3f}")884        lines.append(f"    Avg Consecutive Diff : {ed['avg_consecutive_diff']:.3f}")885    lines.append("")886 887    lines.append("Transition Statistics:")888    avg_entropy = stats["avg_transition_entropy"]889    entropy_str = f"{avg_entropy:.3f}" if avg_entropy is not None else "N/A"890    lines.append(f"  Average Transition Entropy: {entropy_str}")891    cc = stats["context_coverage"]892    cc_str = f"{cc:.3f}" if cc is not None else "N/A"893    lines.append(f"  Context Coverage          : {cc_str}")894    lines.append(sep_line)895    896    stats_report = "\n".join(lines)897    898    # Return both the dictionary and the formatted report string.899    return stats, stats_report900 901###################################################################################902 903def autoregressive_generate(start_seq, mel_tones, trg_array, trg_matches_array, num_new_tokens, chunk_len=5):904    905    # Convert sequences to NumPy arrays.906    current_seq = np.array(start_seq, dtype=int)  # Shape: (num_tokens, token_dim)907    trg_array = np.array(trg_array, dtype=int)      # Shape: (num_candidates, 2, token_dim)908    start_len = len(start_seq)909 910    midx = start_len-1911    912    # Deque for sliding memory of candidate pairs (immutable tuples).913    recent_candidates = deque(maxlen=5)914 915    while (len(current_seq) - start_len) < num_new_tokens:916 917        midx += 1918 919        # Get the last two tokens as context.920        context = current_seq[-(chunk_len-1):]  # Shape: (2, token_dim)921 922        sli = 0923        msize = 0924 925        ctx = context[:, :-1].reshape(1, -1)926        trg_mat_arr = trg_matches_array927 928        while msize < 8:929 930            print('=== Slice', sli)931        932            # Compare context with candidates in trg_array.933            match_mask = np.all(ctx == trg_mat_arr, axis=1)934            match_indices = np.where(match_mask)[0]935 936            msize = match_indices.size937 938            if msize < 8:939                sli += 1940                ctx = context[:, :-1].reshape(1, -1)[:, sli:]941                trg_mat_arr = trg_matches_array[:, :-sli]942                943        if match_indices.size == 0:944            if len(current_seq) > start_len:945 946                #tones_chord = sorted([mel_tones[midx], (mel_tones[midx]+7) % 12])947                tones_chord = sorted([mel_tones[midx]])948                new_tuple = [[mel_tones[midx], TMIDIX.ALL_CHORDS_SORTED.index(tones_chord)]]               949                current_seq = np.concatenate((current_seq, new_tuple), axis=0)950                print('Subbed', midx)951                continue952 953        # From the matching candidates, filter out those whose candidate pair is in recent memory.954        available_candidates = []955        cseen = []956        for idx in match_indices:957 958            if idx not in recent_candidates:959                # Convert candidate pair to an immutable tuple960                candidate_pair = tuple(trg_array[idx].tolist())961                if candidate_pair[-1][0] == mel_tones[midx] and candidate_pair[-1][1] not in cseen:962                    available_candidates.append((idx, candidate_pair))963                    cseen.append(candidate_pair[-1][1])964 965        # If all candidates have recently been used, backtrack.966        if len(available_candidates) < 3:967            if len(current_seq) >= start_len:968                #tones_chord = sorted([mel_tones[midx], (mel_tones[midx]+7) % 12])969                tones_chord = sorted([mel_tones[midx]])970                new_tuple = [[mel_tones[midx], TMIDIX.ALL_CHORDS_SORTED.index(tones_chord)]]               971                current_seq = np.concatenate((current_seq, new_tuple), axis=0)972                #rev_val = random.choice([-1, -2])973                #current_seq = current_seq[:rev_val]974                #print(midx)975                #midx = len(current_seq)976                #print('Reverted', midx, len(current_seq))977                continue978 979        else:980            print(len(available_candidates))        981            # Choose one available candidate at random.982            chosen_idx, chosen_pair = available_candidates[np.random.choice(len(available_candidates))]983            new_token = trg_array[chosen_idx][-1]  # The second token of the candidate pair.984            985    986            # Append the new token to the sequence.987            current_seq = np.concatenate((current_seq, new_token[None, :]), axis=0)988    989            recent_candidates.append(chosen_idx)990 991            print('Gen seq len', len(current_seq))992 993    return current_seq994 995###################################################################################996 997def minkowski_distance_vector_to_matrix(x: cp.ndarray, X: cp.ndarray, p: float = 3) -> cp.ndarray:998    999    """1000    Computes the Minkowski distance between a 1D CuPy array 'x' and each row of a 2D CuPy array 'X'.1001    1002    Parameters:1003        x (cp.ndarray): A 1D array with shape (n_features,) representing a single vector.1004        X (cp.ndarray): A 2D array with shape (n_samples, n_features) where each row is a vector.1005        p (float): The order of the Minkowski distance.1006                   For instance:1007                     - p=1 yields the Manhattan distance,1008                     - p=2 yields the Euclidean distance,1009                     - p=3 yields the Minkowski distance and will use the cube-root implementation,1010                     - p=∞ (or cp.inf) gives the Chebyshev distance.1011    1012    Returns:1013        cp.ndarray: A 1D array of length n_samples containing the Minkowski distance between 'x' 1014                    and the corresponding row in 'X'.1015    """1016 1017    # Compute the element-wise absolute differences between x and every row in X.1018    # Broadcasting x over the rows of X results in an array of shape (n_samples, n_features).1019    diff = cp.abs(X - x)1020    1021    if p == float('inf') or p == cp.inf:1022        # For the Chebyshev distance, use the maximum absolute difference along the feature axis.1023        distances = cp.max(diff, axis=1)1024    elif p == 3:1025        # Instead of using the generic power operation (sum(diff**3) ** (1/3)),1026        # we use cp.cbrt for cube-root calculation when p is exactly 3.1027        distances = cp.cbrt(cp.sum(diff ** 3, axis=1))1028    else:1029        # For general Minkowski distance with finite p,1030        # compute the p-th power of differences, sum them, then take the p-th root.1031        distances = cp.sum(diff ** p, axis=1) ** (1.0 / p)1032        1033    return distances1034 1035###################################################################################1036 1037def pairwise_minkowski_distance(X: cp.ndarray, p: float = 2) -> cp.ndarray:1038    1039    """1040    Computes pairwise Minkowski distances for a 2D CuPy array.1041    1042    Parameters:1043        X (cp.ndarray): A 2D array of shape (n_samples, n_features), where each row represents a vector.1044        p (float): The order of the Minkowski distance.1045                   For example:1046                     - p=1 is the Manhattan distance,1047                     - p=2 is the Euclidean distance,1048                     - p=∞ (e.g., float('inf') or cp.inf) is the Chebyshev distance.1049    1050    Returns:1051        cp.ndarray: A 2D array of shape (n_samples, n_samples) containing the pairwise Minkowski distances.1052    """1053    1054    # Use broadcasting to compute the absolute difference between every pair of vectors.1055    # The result of X[:, None, :] - X[None, :, :] will have shape (n_samples, n_samples, n_features).1056    if p == float('inf') or p == cp.inf:1057        # For the Chebyshev distance, take the maximum absolute difference along the feature axis.1058        return cp.max(cp.abs(X[:, None, :] - X[None, :, :]), axis=-1)1059    else:1060        # Raise the absolute differences to the power p.1061        diff_powered = cp.abs(X[:, None, :] - X[None, :, :]) ** p1062        # Sum over the features for each pair (i, j) and then take the p-th root.1063        distances = cp.sum(diff_powered, axis=-1) ** (1.0 / p)1064        1065        return distances1066    1067###################################################################################1068 1069def pairwise_cosine_similarity(X: cp.ndarray, eps: float = 1e-10) -> cp.ndarray:1070    1071    """1072    Computes the pairwise cosine similarity for a 2D CuPy array.1073    1074    Parameters:1075        X (cp.ndarray): A 2D array of shape (n_samples, n_features) where each row represents a vector.1076        eps (float): A small constant added to the denominator to prevent division by zero.1077    1078    Returns:1079        cp.ndarray: A 2D array of shape (n_samples, n_samples) containing the pairwise cosine similarities.1080    """1081    1082    # Compute the dot product between every pair of rows.1083    # This results in a matrix where element (i, j) is the dot product of X[i] and X[j].1084    dot_product = cp.dot(X, X.T)1085    1086    # Compute the L2 norm (Euclidean norm) for each row vector.1087    norms = cp.linalg.norm(X, axis=1)1088    1089    # Compute the outer product of the norms to form the denominator.1090    # The element (i, j) in this matrix is norms[i] * norms[j].1091    norm_matrix = cp.outer(norms, norms)1092    1093    # Compute the cosine similarity matrix.1094    # Adding a small epsilon (eps) to the denominator prevents division by zero.1095    cosine_similarity = dot_product / (norm_matrix + eps)1096    1097    return cosine_similarity1098 1099###################################################################################1100 1101def cosine_similarities(src_array, trg_array):1102    1103    """1104    Computes cosine similarities between 1D src array and 2D trg array1105    """1106   1107    src_norm = cp.linalg.norm(src_array)1108 1109    trg_norms = cp.linalg.norm(trg_array, axis=1)1110 1111    dot_products = cp.dot(trg_array, src_array)1112 1113    cosine_sims = dot_products / (src_norm * trg_norms + 1e-10)1114    1115    return cosine_sims1116 1117###################################################################################1118 1119def embeddings_topk_cosine_neighbors(embeddings,1120                                     k=1,1121                                     row_batch=4096,1122                                     col_batch=40961123                                    ):1124    1125    """1126    For each embedding, find the indices and similarities of its top-k neighbors,1127    excluding itself, sorted by descending similarity.1128 1129    Args:1130        embeddings (cp.ndarray): shape (N, D), float32 on GPU.1131        k (int): how many neighbors to return (must be < N).1132        row_batch (int): number of rows to process at once.1133        col_batch (int): number of columns to process at once.1134 1135    Returns:1136        top_idx (cp.ndarray): shape (N, k), int32 indices of nearest neighbors.1137        top_sim (cp.ndarray): shape (N, k), float32 cosine similarities.1138                             Each row is sorted descending.1139    """1140    1141    # normalize embeddings to unit length1142    norms = cp.linalg.norm(embeddings, axis=1, keepdims=True)1143    embeddings /= norms1144 1145    N, D = embeddings.shape1146    if not (1 <= k < N):1147        raise ValueError(f"k must satisfy 1 ≤ k < N; got N={N}, k={k}")1148 1149    # placeholders for top-k1150    top_sim = cp.full((N, k), -cp.inf, dtype=cp.float32)1151    top_idx = cp.full((N, k), -1, dtype=cp.int32)1152 1153    for i in tqdm.tqdm(range(0, N, row_batch)):1154        i_end = min(i + row_batch, N)1155        rows = embeddings[i:i_end]           # (rb, D)1156        rb = i_end - i1157 1158        # per-block buffers1159        best_s = top_sim[i:i_end]            # (rb, k)1160        best_i = top_idx[i:i_end]            # (rb, k)1161        row_ids = cp.arange(i, i_end)        # (rb,)1162 1163        for j in range(0, N, col_batch):1164            j_end = min(j + col_batch, N)1165            cols = embeddings[j:j_end]       # (cb, D)1166            sims = rows.dot(cols.T)          # (rb, cb)1167 1168            # mask out self-similarities1169            # find rows whose global index ∈ [j, j_end)1170            mask = (row_ids >= j) & (row_ids < j_end)1171            if mask.any():1172                local_rows = cp.where(mask)[0]1173                local_cols = row_ids[mask] - j1174                sims[local_rows, local_cols] = -cp.inf1175 1176            # get top-k within this block1177            # argpartition to grab k largest in each row1178            part = cp.argpartition(sims, -k, axis=1)[:, -k:]       # (rb, k)1179            blk_s = sims[cp.arange(rb)[:, None], part]            # (rb, k)1180            blk_i = part + j                                       # (rb, k)1181 1182            # merge with running best1183            cat_s = cp.concatenate([best_s, blk_s], axis=1)       # (rb, 2k)1184            cat_i = cp.concatenate([best_i, blk_i], axis=1)1185 1186            # select new top-k from the 2k candidates1187            part2 = cp.argpartition(cat_s, -k, axis=1)[:, -k:]1188            best_s = cat_s[cp.arange(rb)[:, None], part2]1189            best_i = cat_i[cp.arange(rb)[:, None], part2]1190 1191        # write back1192        top_sim[i:i_end] = best_s1193        top_idx[i:i_end] = best_i1194 1195    # final sort per row so sims descend1196    if k > 1:1197        order = cp.argsort(-top_sim, axis=1)1198        top_sim = cp.take_along_axis(top_sim, order, axis=1)1199        top_idx = cp.take_along_axis(top_idx, order, axis=1)1200 

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