Arcturex/brca-navigator

1"","Factor1","Factor2","Factor3","Factor4","Factor5","Factor6","Factor7","Factor8","Factor9","Factor10","Factor11","Factor12","Factor13","Factor14","Factor15","os_time","os_event","subtype","age","stage","risk_score","risk_percentile","surv_3yr","umap_x","umap_y"2"TCGA-A1-A0SF",-0.230735018849373,1.3354971408844,-0.366184860467911,-0.128433093428612,0.132895350456238,-1.17056906223297,-0.326162546873093,-0.0433838963508606,2.62671494483948,-0.102009534835815,-0.086609810590744,-1.11768424510956,0.585048913955688,0.159619465470314,-0.622986853122711,1463,0,"LumA",54,"Stage IIA",-0.738105625516913,44.7306791569087,0.955812166589324,1.71287712657548,-0.06482452884354453"TCGA-A1-A0SH",0.305185198783875,1.57251155376434,-0.0680223181843758,0.951573729515076,-0.678641498088837,1.25661277770996,-2.81238436698914,-0.222018718719482,-0.459431499242783,-0.991747260093689,-0.439991772174835,0.243524923920631,-0.209351852536201,-0.777535319328308,0.985522150993347,1437,0,"LumA",39,"Stage 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IIB",-0.492349170251589,55.2693208430913,0.943853478605439,-0.0919484598833621,-4.038221388962738"TCGA-A2-A0CT",-4.08386373519897,0.52978378534317,2.00928473472595,-2.28834772109985,-0.246480867266655,0.310454577207565,0.499541640281677,2.10294198989868,-0.656391203403473,1.43372321128845,-0.382967621088028,-1.43049681186676,-0.25671249628067,-0.624632298946381,2.33126926422119,2288,0,"LumA",71,"Stage IIA",-0.068104859091604,71.1943793911007,0.915468243754939,1.9617818470083,-3.446320828743019"TCGA-A2-A0EU",-2.98854684829712,1.45666408538818,-0.487619400024414,0.416611194610596,-0.112111695110798,0.589854776859283,0.0632981956005096,-0.540704011917114,0.518220126628876,1.13060033321381,0.336886882781982,-2.16343951225281,-1.0101683139801,-0.0157525092363358,0.197384640574455,1043,0,"LumA",79,"Stage IA",-1.45890978233078,19.672131147541,0.978259279415042,0.452004221204406,-2.5496905373843310"TCGA-A2-A0ST",4.62244987487793,-2.47438311576843,0.246576502919197,0.618780970573425,4.64816093444824,0.315814554691315,1.91506350040436,-0.995994210243225,-0.382799178361893,0.806918740272522,-0.106627285480499,-0.814483404159546,-0.356915503740311,-0.601877868175507,0.949127972126007,1643,0,"Basal",62,"Stage IIA",-2.1685698912979,8.43091334894614,0.989247946228961,-0.61595745378021,2.604057621256711"TCGA-A2-A0SU",-0.921389102935791,1.22075867652893,-0.0322451218962669,2.7358763217926,0.0563139617443085,-0.295665591955185,-0.0400628559291363,-0.107291907072067,-0.574834167957306,0.548840045928955,-0.565792798995972,-1.73560309410095,-0.826455771923065,1.35143768787384,-0.869856178760529,1661,0,"LumA",66,"Stage IIA",0.153908688959696,78.6885245901639,0.895587974059657,-0.0303644747354322,-2.080513136300512"TCGA-A2-A0SV",-2.03986930847168,-1.368128657341,-0.113191351294518,0.142326280474663,0.671701550483704,-0.477081269025803,-2.06451678276062,-0.179445624351501,-0.0635391622781754,-0.77429735660553,0.133110508322716,-0.747636377811432,-0.566352009773254,0.417830020189285,0.959178268909454,825,1,"LumB",63,"Stage IV",0.932850480907438,93.6768149882904,0.786386374544185,1.06076906018103,-1.4913087487429813"TCGA-A2-A0SW",-0.336002081632614,-1.85357248783112,-1.53923273086548,-2.35640168190002,2.87902975082397,0.0403699986636639,-0.444475710391998,0.280528783798218,0.0570319630205631,0.312298566102982,-0.881545007228851,-1.03159725666046,-0.275642901659012,-0.231461241841316,0.640854775905609,1364,1,"LumB",82,"Stage IV",0.767555186373868,92.9742388758782,0.815711398704231,0.558822449368638,-0.57433903304196414"TCGA-A2-A0SX",4.46641397476196,-2.84488081932068,0.0329545475542545,0.333348989486694,0.0281674601137638,1.84325194358826,1.00682044029236,-0.658820271492004,0.700404167175293,-0.0449399761855602,-0.359474718570709,-1.54052174091339,-0.410934150218964,0.430072277784348,-0.267401397228241,1288,0,"Basal",48,"Stage IA",-2.41065299430333,5.3864168618267,0.991549936412066,-0.735922389603136,4.9289152495221315"TCGA-A2-A0T0",1.54701435565948,-4.92405939102173,-1.24562084674835,1.56570184230804,-1.85490524768829,-0.211255833506584,-1.22777235507965,0.471201777458191,-0.911512494087219,0.15697155892849,-0.756680488586426,-0.653002679347992,-0.765905559062958,0.336965143680573,0.317825585603714,533,0,"Basal",59,"Stage IIB",0.448832882725265,86.4168618266979,0.862343330075814,-0.431963727195412,5.3611012177776716"TCGA-A2-A0T1",1.68635582923889,-1.88391089439392,-0.428371250629425,0.85312408208847,3.67143106460571,-0.355197042226791,-0.997736990451813,-0.0905399471521378,-0.448652774095535,-0.538788914680481,0.267620086669922,-0.372337698936462,-0.983177900314331,-1.18695950508118,1.80852854251862,520,0,"Her2",55,"Stage IIIC",-0.0434157896039968,71.8969555035129,0.913449421863613,-0.218342714002963,2.153349654687517"TCGA-A2-A0T2",1.73492968082428,-4.69996213912964,-0.934253931045532,0.798267841339111,-3.42880964279175,-1.81445229053497,-1.10399615764618,0.672162771224976,-0.75245612859726,-0.602595567703247,1.61994218826294,-0.0403807461261749,-0.999413669109344,-0.376098662614822,1.86487901210785,240,1,"Basal",66,"Stage IV",2.00571413922055,98.5948477751756,0.495298175383475,-0.14463073482182,5.5470159885364618"TCGA-A2-A0T4",0.0671456381678581,1.27617049217224,1.31755292415619,0.00167340505868196,1.2091156244278,-0.728444457054138,-1.18538856506348,0.414046853780746,-0.742360055446625,0.171014919877052,-0.536200523376465,-0.0506557486951351,-1.0531610250473,-0.0448827780783176,1.78746819496155,624,0,"LumA",62,"Stage IIA",-0.788156348828511,42.6229508196721,0.957923313810043,-0.650981198671297,-0.73759934415973219"TCGA-A2-A0T5",-0.652172446250916,1.06285107135773,0.408758372068405,0.343058466911316,-1.65241503715515,-0.212544322013855,-0.571633696556091,-1.79580783843994,1.40898644924164,-0.240640759468079,-0.301052659749985,-0.748191237449646,-0.290114134550095,0.268759310245514,-0.384856402873993,531,0,"LumA",39,"Stage IIB",-0.622291827616977,49.4145199063232,0.950522854116989,-0.623947473248298,-1.3277932652482220"TCGA-A2-A0T6",1.25666749477386,2.40624785423279,1.0433224439621,-1.39527702331543,0.821058690547943,1.48942244052887,-0.796877920627594,-0.789980351924896,-0.0466514006257057,-0.246792957186699,-0.0107320006936789,-0.703816831111908,-0.263800650835037,0.285522639751434,1.10913503170013,575,0,"LumA",50,"Stage IIB",-0.808581645028778,41.6861826697892,0.95875623290739,-1.29743825244001,-0.78307784932281121"TCGA-A2-A0T7",0.217191949486732,0.460546612739563,0.366276174783707,1.58528125286102,-0.960906684398651,1.30103945732117,-1.17453706264496,1.3486260175705,1.60350739955902,-0.536310970783234,0.343141704797745,-0.657689571380615,-0.940301775932312,-0.227422758936882,0.505894124507904,631,0,"LumA",51,"Stage IIA",-0.499012468676371,54.5667447306792,0.944215755977928,-0.743774936558041,-1.2980697064541922"TCGA-A2-A0YC",-1.99236977100372,2.05122661590576,-0.226295933127403,-0.56386399269104,0.583867073059082,1.38000905513763,-0.0112030422315001,-1.23885917663574,-0.970615804195404,-0.289846271276474,0.677314758300781,-0.338565766811371,-0.561219811439514,-0.99216365814209,1.48079800605774,989,0,"LumA",59,"Stage IIB",-0.98692985946286,33.4894613583138,0.96537521996962,0.513300357024928,-3.3226183471281523"TCGA-A2-A0YD",0.868827342987061,2.17900681495667,0.878671884536743,-0.140402853488922,0.46820655465126,1.2946492433548,-1.34737372398376,-0.841889202594757,-0.0036313571035862,-0.932705760002136,0.46862581372261,-0.837757468223572,-0.98737496137619,-0.813030898571014,0.735858619213104,769,0,"LumA",63,"Stage IIB",-0.694212309840973,46.3700234192037,0.953875850234869,-1.14901775810537,-0.76978118761838224"TCGA-A2-A0YE",2.12108731269836,-4.4581151008606,-1.57988607883453,0.740792751312256,-3.33521628379822,1.23385417461395,-0.564673781394958,0.965304136276245,-0.645692408084869,-0.834263980388641,0.669086217880249,-0.382260084152222,-1.40634262561798,0.0791520625352859,1.35633671283722,553,0,"Basal",48,"Stage IIB",0.454698759642123,86.6510538641686,0.861592297688944,-0.424701825413052,5.6836999904352625"TCGA-A2-A0YF",-2.62917065620422,2.08874344825745,-0.94233500957489,-0.663682878017426,0.149842411279678,1.66743946075439,-0.00551815703511238,-1.36960482597351,-1.2839275598526,2.14361548423767,0.710223138332367,-0.899948120117188,-1.12577724456787,-0.544205486774445,1.37287890911102,469,0,"LumA",67,"Stage IA",-2.26201920612265,6.79156908665105,0.990202484200769,0.464224857808193,-3.6096563967850826"TCGA-A2-A0YG",-3.04150581359863,-1.09158611297607,1.47744882106781,-0.321528494358063,-0.00198653899133205,2.98132824897766,-1.10566854476929,1.59226977825165,-0.0351710505783558,0.32607114315033,0.804499983787537,-0.874940037727356,-0.991506159305573,0.0803550705313683,1.86612522602081,665,0,"LumB",63,"Stage IIIC",1.9922945966564,98.3606557377049,0.499958693735841,1.63677995806605,-3.2133587634591727"TCGA-A2-A0YH",-1.12250638008118,-0.894653081893921,-2.03926134109497,0.979161500930786,2.46990871429443,1.47449624538422,-0.79378867149353,0.479675650596619,0.199971675872803,0.468732893466949,-0.640775144100189,-1.24586892127991,-1.41897249221802,-0.247098430991173,0.398187458515167,658,0,"LumB",53,"Stage IIIA",-1.22241328570132,26.463700234192,0.972539092139428,1.26308483582548,-1.7375494234102528"TCGA-A2-A0YI",0.831881165504456,1.91139221191406,0.766788005828857,0.277725607156754,1.86382210254669,1.57179939746857,0.139778301119804,-1.23994588851929,-0.465366333723068,0.60343337059021,0.415954828262329,-0.607707679271698,-0.892677426338196,-1.36318528652191,1.61465668678284,441,0,"LumA",62,"Stage IA",-3.22463779062689,1.17096018735363,0.996247021754653,-0.978793170320595,-0.52499541104624329"TCGA-A2-A0YJ",2.02383685112,-6.11210155487061,-2.11166596412659,-0.267082333564758,-4.18639707565308,2.23783826828003,-0.657685220241547,-0.75066465139389,-2.39619779586792,-0.481940180063248,-0.459879159927368,-0.405196756124496,-0.963932812213898,-0.735535502433777,1.40160405635834,565,0,"Basal",39,"Stage IIIA",-0.162145467507503,67.4473067915691,0.922754050661572,-0.397813703776542,5.9564396591382330"TCGA-A2-A0YK",3.37678861618042,2.2122437953949,0.441608101129532,-0.227423846721649,1.76310431957245,0.876502931118011,0.354555398225784,0.209204941987991,0.045308742672205,0.654395163059235,0.00635683164000511,-1.1773054599762,-1.20479154586792,0.429857224225998,1.42009592056274,587,0,"Normal",61,"Stage IIA",-0.822198513069334,40.2810304449649,0.959302528560022,-1.30026971097897,0.3608984052893331"TCGA-A2-A0YL",1.32708966732025,2.23976683616638,-0.465515941381454,0.812279939651489,-1.35392820835114,1.03139662742615,-0.200738415122032,-0.053645383566618,1.88736772537231,0.438400089740753,-0.457151621580124,-0.338309645652771,-0.670040428638458,-0.905891299247742,0.70422899723053,445,0,"LumA",48,"Stage IIIA",-0.632962769782151,48.4777517564403,0.951034941351155,-1.64894328890793,-0.1425204082395332"TCGA-A2-A0YM",3.1712532043457,-5.6305570602417,1.24547576904297,-1.18293738365173,-3.0209174156189,2.55866479873657,0.383839309215546,-0.731473863124847,-0.393937051296234,-0.292845726013184,-0.183123573660851,-0.931187212467194,-0.249911159276962,-0.270824402570724,1.10883843898773,964,0,"Basal",67,"Stage IIA",0.350668724627857,84.0749414519906,0.874367695636915,-0.455626953807187,5.9473574620130133"TCGA-A2-A0YT",-3.67090773582458,-0.848931312561035,-1.44640111923218,0.398253172636032,0.764639556407928,1.99466347694397,-0.68160617351532,3.41715693473816,-0.519671201705933,0.212756276130676,0.650983810424805,-1.402019739151,-0.713229358196259,0.451722234487534,1.44318211078644,723,1,"LumB",56,"Stage IIIB",0.0959897766177935,76.1124121779859,0.901162873043226,1.9600736673009,-2.6903346720478434"TCGA-A2-A1FV",-2.0564501285553,3.36227011680603,-0.804299771785736,-4.43325805664062,-1.5600368976593,1.70927131175995,2.35093545913696,2.32310247421265,-0.101918913424015,3.16382122039795,0.35305854678154,0.704003810882568,1.21577572822571,-3.21105742454529,2.72167491912842,460,0,"LumA",74,"Stage IIB",-0.257466283388274,62.7634660421546,0.929523344896215,0.436461127736261,-2.9787713426489635"TCGA-A2-A1FW",-3.4576244354248,1.05787169933319,-0.36327338218689,-0.845081925392151,0.12338700145483,2.92368364334106,1.3763861656189,3.65601420402527,-0.471554100513458,1.5639363527298,1.38555335998535,-1.26356399059296,0.329793065786362,0.864929378032684,0.846666812896729,221,0,"LumB",62,"Stage 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IA",-1.77227712131834,14.0515222482436,0.984061032452765,-0.422049310752079,-4.35472714256159305"TCGA-D8-A27F",3.75601029396057,-4.90634536743164,-0.911430537700653,0.8548623919487,-4.43351745605469,2.22644376754761,-0.232728615403175,0.572977721691132,-0.734857022762299,-0.656356751918793,0.597019374370575,-0.00668348139151931,0.555312037467957,1.22905254364014,-0.788258850574493,227,0,"Basal",40,"Stage IIA",0.575802517561808,88.2903981264637,0.845225190127383,-0.823827275568722,5.78766907902873306"TCGA-D8-A27G",-0.307972460985184,0.667091548442841,0.710716247558594,-1.56984281539917,1.25123202800751,1.11062729358673,-0.929370164871216,0.520584166049957,-0.147222220897675,-0.134172782301903,0.344838857650757,0.861563801765442,1.10874247550964,-0.537911057472229,0.1776482462883,209,0,"LumA",75,"Stage 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0066,-0.492838621139526,0.15898871421814,-0.355460077524185,0.640627264976501,0.607143938541412,-1.37243854999542,2331,0,"LumA",57,"",-0.0603310703018098,71.4285714285714,0.914837471448999,-0.401889116625597,-4.33783288244036428"TCGA-GM-A2DN",1.26644372940063,-0.014015581458807,0.595116198062897,-0.292678773403168,2.29545736312866,-0.0299960747361183,0.423100858926773,-1.64348471164703,1.05800890922546,0.241634130477905,0.0709487125277519,0.264139264822006,0.87348347902298,-0.0973547026515007,-1.48634970188141,2352,0,"LumA",58,"",-0.837852953465599,39.8126463700234,0.959921822445916,-0.26093080190553,1.29581449922707429"TCGA-GM-A2DO",1.58388829231262,-0.7505122423172,-0.0873670801520348,-0.307980924844742,5.86726808547974,-1.85102081298828,3.34123778343201,-0.398974031209946,1.76968276500702,0.976189494132996,0.287899345159531,1.19523894786835,0.785538852214813,-1.43417978286743,-0.493067741394043,1622,0,"LumB",54,"",-2.35072870055931,6.08899297423888,0.991030440094603,-0.263794273166577,2.01740097858603430